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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:254.6 nTPM
HPA Brain:100.0 nTPM
GTEx:254.6 nTPM
FANTOM5:83.6 Scaled Tags Per Million
Pig:126.9 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

100.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 100.0
1981 Female, age 72, midline 123.5
2565 Male, age 75, midline 108.6
2816 Male, age 47, midline 92.2
2194 Female, age 79, both hemispheres 89.4
2048 Male, age 55, midline 86.5
Cervical spinal cord, dorsal horn
nTPM: 98.9
2173 Female, age 72, unknown 137.3
2296 Male, age 66, both hemispheres 128.4
2069 Male, age 47, both hemispheres 98.1
1877 Male, age 55, unknown 89.8
2297 Male, age 75, both hemispheres 71.9
2721 Male, age 90, both hemispheres 68.1
Cervical spinal cord, ventral horn
nTPM: 94.0
2098 Female, age 72, unknown 130.6
2809 Male, age 90, both hemispheres 104.7
2068 Male, age 55, unknown 89.4
2480 Male, age 75, both hemispheres 86.9
2295 Male, age 66, both hemispheres 80.3
2820 Female, age 79, both hemispheres 72.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

254.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 254.6
Samples: 159

Max nTPM: 504.4
Min nTPM: 100.4
Std nTPM: 72.3
Median nTPM: 246.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 504.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 443.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 430.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 428.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 419.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 418.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 417.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 395.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 393.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 386.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 370.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 368.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 367.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 362.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 351.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 340.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 340.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 339.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 339.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 336.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 332.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 328.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 326.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 326.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 325.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 324.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 315.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 313.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 311.9
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 310.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 310.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 310.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 309.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 308.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 307.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 307.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 306.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 305.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 304.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 304.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 304.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 303.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 299.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 299.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 293.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 293.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 292.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 290.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 289.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 286.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 286.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 285.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 282.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 278.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 276.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 275.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 273.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 270.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 268.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 266.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 266.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 265.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 262.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 262.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 261.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 260.9
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 260.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 257.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 256.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 254.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 252.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 252.2
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 252.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 251.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 250.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 249.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 248.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 247.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 247.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 246.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 245.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 244.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 244.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 243.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 240.6
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 237.3
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 237.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 235.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 234.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 234.4
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 231.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 231.5
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 230.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 229.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 229.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 229.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 229.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 227.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 226.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 226.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 225.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 225.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 222.8
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 222.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 220.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 219.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 218.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 217.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 216.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 214.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 213.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 213.5
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 212.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 211.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 206.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 206.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 205.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 205.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 205.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 204.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 203.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 201.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 201.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 201.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 201.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 200.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 197.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 196.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 196.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 194.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 194.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 188.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 186.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 185.1
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 183.2
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 177.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 176.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 174.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 169.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 166.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 165.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 164.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 164.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 164.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 162.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 162.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 161.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 161.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 160.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 155.8
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 154.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 153.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 153.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 142.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 139.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 134.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 127.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 115.5
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 100.4
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

83.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 83.6
FF:10181-103D1 60 years, female 86.5
FF:10159-103A6 76 years, female 80.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

126.9
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 126.9
Samples: 4

Max nTPM: 184.0
Min nTPM: 96.0
Sample A Female 96.0
Sample B Female 122.2
Sample C Male 184.0
Sample D Male 105.2
Ventral spinal cord
nTPM: 125.2
Samples: 4

Max nTPM: 141.5
Min nTPM: 112.5
Sample A Female 112.5
Sample B Female 126.7
Sample C Male 141.5
Sample D Male 120.0

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