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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:175.9 nTPM
HPA Brain:480.4 nTPM
GTEx:175.9 nTPM
FANTOM5:450.5 Scaled Tags Per Million
Pig:344.4 nTPM
Mouse:160.0 nTPM
Allen mouse:22.0 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

480.4
Sample id Sample description nTPM
Amygdala
nTPM: 414.5
2814 Male, age 76, right hemisphere 639.1
2517 Female, age 94, left hemisphere 430.1
1987 Female, age 91, left hemisphere 378.9
2514 Male, age 75, right hemisphere 318.8
2695 Female, age 67, right hemisphere 305.5
Basal amygdala
nTPM: 480.4
2685 Female, age 94, left hemisphere 561.1
1955 Male, age 76, both hemispheres 527.2
2110 Male, age 80, left hemisphere 503.8
2243 Female, age 91, right hemisphere 480.8
2827 Female, age 67, right hemisphere 407.4
2609 Male, age 75, right hemisphere 402.1
Central amygdala
nTPM: 474.2
1905 Male, age 76, both hemispheres 597.0
2239 Male, age 80, left hemisphere 501.3
2826 Female, age 94, left hemisphere 487.2
2701 Female, age 91, right hemisphere 424.1
2515 Male, age 75, right hemisphere 361.6
Corticomedial amygdala
nTPM: 459.8
2829 Male, age 80, left hemisphere 563.0
2240 Male, age 76, both hemispheres 557.7
2429 Female, age 94, left hemisphere 467.0
2242 Female, age 91, right hemisphere 428.5
2535 Female, age 67, right hemisphere 419.0
2428 Male, age 75, right hemisphere 323.5
Lateral amygdala
nTPM: 437.5
1883 Male, age 76, both hemispheres 556.1
2534 Female, age 94, left hemisphere 555.7
2256 Male, age 80, left hemisphere 443.7
2255 Female, age 91, right hemisphere 389.0
2516 Male, age 75, right hemisphere 345.6
2830 Female, age 67, right hemisphere 334.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

175.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 175.9
Samples: 152

Max nTPM: 412.3
Min nTPM: 4.0
Std nTPM: 59.7
Median nTPM: 172.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 412.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 355.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 331.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 324.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 301.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 297.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 292.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 283.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 278.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 278.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 269.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 267.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 265.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 260.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 257.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 253.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 252.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 247.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 243.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 238.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 235.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 233.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 233.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 229.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 228.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 226.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 225.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 222.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 217.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 216.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 214.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 213.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 212.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 212.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 210.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 210.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 209.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 207.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 206.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 205.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 204.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 201.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 201.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 200.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 198.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 197.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 196.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 195.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 195.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 193.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 192.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 191.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 190.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 189.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 188.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 186.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 185.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 184.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 184.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 184.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 182.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 181.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 179.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 179.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 178.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 178.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 177.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 176.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 176.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 175.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 175.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 175.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 174.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 174.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 173.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 173.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 172.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 172.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 170.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 170.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 169.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 169.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 166.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 164.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 161.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 160.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 159.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 159.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 158.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 158.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 157.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 157.4
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 157.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 154.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 153.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 153.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 152.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 150.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 149.5
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 149.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 147.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 147.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 147.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 146.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 146.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 146.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 145.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 144.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 143.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 142.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 142.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 139.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 137.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 137.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 137.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 136.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 134.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 133.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 132.4
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 130.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 130.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 129.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 123.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 122.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 120.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 120.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 120.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 119.4
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 118.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 117.2
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 116.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 115.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 112.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 112.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 112.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 111.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 111.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 108.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 108.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 107.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 106.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 101.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 100.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 100.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 98.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 94.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 89.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 80.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 70.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 61.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 50.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 4.0
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

450.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 450.5
FF:10151-102I7 76 years, female 450.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

344.4
Pig sample Sample description nTPM
Amygdala
nTPM: 344.4
Samples: 4

Max nTPM: 475.8
Min nTPM: 267.3
Sample A Female 475.8
Sample B Female 267.3
Sample C Male 298.2
Sample D Male 336.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

160.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 159.9
Samples: 4

Max nTPM: 173.0
Min nTPM: 147.2
Sample A Male 173.0
Sample B Male 147.2
Sample C Female 168.6
Sample D Female 150.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

22.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 22.0
385775 Antisense, RP_040625_01_E03, Mouse strain C57BL/6J (56 days, male) 22.0

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