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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:217.4 nTPM
FANTOM5:441.5 Scaled Tags Per Million
Pig:388.8 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA018790Antibody HPA048800
Glial cells MediumNot detected
Neuronal cells Not detectedMedium




CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

217.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 217.4
Samples: 246

Max nTPM: 439.1
Min nTPM: 84.9
Std nTPM: 66.0
Median nTPM: 213.8
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 439.1
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 390.7
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 383.5
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 378.0
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 347.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 347.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 347.0
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 344.5
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 341.2
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 333.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 333.1
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 327.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 325.3
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 324.2
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 323.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 322.8
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 322.5
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 320.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 317.7
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 317.4
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 316.7
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 316.5
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 315.3
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 314.2
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 310.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 307.5
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 304.8
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 302.7
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 301.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 300.3
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 300.3
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 298.4
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 294.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 294.1
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 293.6
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 291.5
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 291.2
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 291.1
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 289.9
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 287.2
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 283.0
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 281.4
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 281.3
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 279.0
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 278.3
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 278.1
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 276.4
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 275.9
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 273.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 273.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 272.0
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 271.1
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 270.2
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 269.7
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 267.9
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 266.9
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 266.5
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 263.2
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 263.2
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 262.8
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 262.7
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 262.3
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 262.3
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 260.6
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 260.0
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 256.9
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 256.2
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 256.1
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 255.6
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 255.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 254.8
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 252.5
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 252.4
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 252.2
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 251.3
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 251.3
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 250.9
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 250.8
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 250.6
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 249.2
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 247.3
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 246.9
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 246.0
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 245.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 244.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 243.8
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 243.6
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 241.4
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 239.7
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 237.8
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 237.8
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 237.8
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 237.1
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 236.8
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 236.2
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 235.6
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 234.9
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 234.6
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 234.4
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 233.7
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 232.8
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 232.2
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 232.1
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 231.3
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 230.8
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 230.6
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 230.1
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 229.7
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 229.6
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 226.3
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 226.3
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 221.8
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 221.6
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 221.6
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 221.2
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 221.2
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 220.3
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 218.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 217.9
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 217.5
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 217.4
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 214.5
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 214.0
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 213.6
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 213.6
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 213.4
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 212.3
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 212.0
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 211.4
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 211.1
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 210.6
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 208.5
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 207.6
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 204.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 204.1
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 203.4
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 201.6
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 200.4
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 200.4
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 199.7
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 199.7
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 199.4
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 198.5
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 198.0
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 197.4
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 195.3
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 195.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 194.5
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 192.8
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 192.5
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 192.1
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 192.0
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 191.8
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 191.4
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 190.9
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 190.8
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 190.0
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 188.8
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 188.7
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 187.5
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 186.0
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 183.8
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 183.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 183.2
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 182.9
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 181.4
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 181.4
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 179.5
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 178.9
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 178.6
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 177.8
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 176.8
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 176.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 175.2
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 174.1
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 171.8
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 171.7
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 171.7
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 171.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 170.2
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 168.5
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 168.2
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 167.6
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 167.0
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 166.6
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 165.6
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 164.9
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 164.7
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 162.9
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 162.5
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 162.2
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 160.8
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 160.2
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 159.6
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 158.6
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 158.4
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 156.2
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 155.8
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 153.0
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 151.8
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 151.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 151.0
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 151.0
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 150.6
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 150.6
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 149.9
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 148.0
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 147.1
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 146.6
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 143.0
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 142.1
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 140.5
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 139.6
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 138.9
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 137.5
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 136.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 135.6
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 133.4
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 127.8
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 126.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 126.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 126.4
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 125.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 125.0
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 125.0
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 124.9
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 123.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 123.6
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 123.2
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 122.5
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 122.3
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 121.3
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 120.2
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 119.1
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 117.1
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 116.8
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 116.6
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 114.7
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 113.6
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 113.6
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 108.1
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 107.6
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 107.5
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 104.8
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 95.6
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 84.9
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

441.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 441.5
FF:10164-103B2 76 years, female 441.5

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

388.8
Pig sample Sample description nTPM
Caudate
nTPM: 388.8
Samples: 4

Max nTPM: 462.5
Min nTPM: 300.5
Sample A Female 300.5
Sample B Female 438.4
Sample C Male 462.5
Sample D Male 353.9

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