MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:169.2 nTPM
HPA Brain:494.7 nTPM
GTEx:169.2 nTPM
FANTOM5:363.5 Scaled Tags Per Million
Pig:488.7 nTPM
Mouse:220.0 nTPM
Allen mouse:21.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 494.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 441.6
2666 Male, age 74, left hemisphere 531.0
1827 Male, age 72, unknown 502.0
2586 Male, age 75, left hemisphere 474.7
2019 Male, age 18, unknown 469.2
2828 Female, age 72, unknown 435.0
1833 Male, age 53, unknown 410.7
2411 Female, age 72, unknown 407.8
2219 Male, age 76, both hemispheres 403.7
1870 Female, age 42, unknown 396.1
1830 Male, age 51, unknown 386.2
Dorsal raphe nucleus
nTPM: 390.7
2298 Female, age 72, unknown 471.3
2750 Male, age 76, both hemispheres 408.6
2047 Male, age 72, unknown 405.4
1828 Male, age 53, unknown 379.9
2016 Female, age 72, unknown 288.3
Inferior colliculus
nTPM: 440.2
2849 Male, age 72, unknown 472.3
1848 Female, age 42, unknown 466.6
2097 Female, age 72, unknown 452.7
1890 Male, age 53, unknown 369.0
Median raphe nucleus
nTPM: 494.7
2220 Male, age 76, midline 494.7
Periaquaductal grey, anterior
nTPM: 492.4
2502 Female, age 75, unknown 507.9
1947 Male, age 18, unknown 495.5
1795 Male, age 51, unknown 473.8
Periaquaductal grey, dorsal
nTPM: 348.9
1840 Male, age 53, unknown 371.3
2464 Female, age 72, unknown 365.8
1831 Male, age 72, unknown 336.1
2850 Male, age 76, both hemispheres 322.6
Periaquaductal grey, lateral
nTPM: 318.9
2053 Male, age 18, unknown 337.4
2140 Male, age 76, both hemispheres 326.9
2272 Male, age 74, both hemispheres 292.4
Pretectal area
nTPM: 492.8
1816 Male, age 51, unknown 633.6
1817 Female, age 42, unknown 616.6
2667 Female, age 75, unknown 606.4
1944 Female, age 72, unknown 602.7
2007 Male, age 72, unknown 591.3
1815 Male, age 53, unknown 511.6
2224 Female, age 72, unknown 424.4
2407 Male, age 75, both hemispheres 406.3
2825 Male, age 18, unknown 402.2
2316 Male, age 76, right hemisphere 326.7
2273 Male, age 74, both hemispheres 298.6
Red nucleus
nTPM: 392.4
2785 Male, age 18, unknown 464.2
2584 Male, age 75, left hemisphere 454.3
1821 Female, age 72, unknown 424.8
2588 Male, age 74, left hemisphere 407.6
1954 Female, age 42, unknown 392.6
2227 Male, age 72, unknown 390.7
2823 Male, age 76, right hemisphere 386.9
1865 Male, age 51, unknown 386.1
2769 Male, age 72, unknown 377.0
1904 Male, age 53, unknown 360.9
2503 Female, age 72, unknown 351.2
2725 Female, age 75, unknown 313.0
Substantia nigra
nTPM: 404.9
1941 Male, age 53, unknown 546.5
1889 Female, age 72, unknown 521.6
1916 Female, age 42, unknown 512.4
1851 Male, age 51, unknown 406.3
2665 Male, age 74, both hemispheres 405.2
2241 Male, age 72, unknown 380.5
2583 Male, age 75, right hemisphere 376.8
2699 Male, age 18, unknown 310.5
2409 Female, age 72, unknown 303.5
2590 Female, age 75, unknown 285.3
Superior colliculus
nTPM: 470.0
2668 Female, age 75, unknown 608.0
2087 Female, age 72, unknown 544.0
2664 Male, age 75, both hemispheres 532.7
1796 Male, age 53, unknown 517.5
2261 Male, age 18, unknown 514.3
1895 Male, age 76, right hemisphere 473.1
1839 Male, age 51, unknown 435.8
2587 Male, age 74, left hemisphere 378.1
1913 Female, age 42, unknown 376.4
1995 Male, age 72, unknown 320.4
Ventral tegmental area
nTPM: 409.2
2218 Male, age 76, both hemispheres 471.1
2410 Female, age 72, unknown 447.5
2223 Female, age 72, unknown 430.3
1915 Female, age 42, unknown 410.2
1942 Male, age 51, unknown 376.4
2021 Male, age 53, unknown 319.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 169.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 169.2
Samples: 139

Max nTPM: 629.5
Min nTPM: 63.7
Std nTPM: 83.8
Median nTPM: 152.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 629.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 508.6
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 392.8
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 365.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 360.3
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 343.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 308.8
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 303.2
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 285.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 284.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 281.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 363.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 363.5
FF:10158-103A5 76 years, female 363.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 488.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 350.0
Samples: 4

Max nTPM: 444.6
Min nTPM: 246.8
Sample A Female 444.6
Sample B Female 246.8
Sample C Male 440.6
Sample D Male 268.0
Midbrain
nTPM: 451.0
Samples: 4

Max nTPM: 623.2
Min nTPM: 300.4
Sample A Female 349.4
Sample B Female 300.4
Sample C Male 623.2
Sample D Male 531.1
Periaqueductal gray
nTPM: 328.6
Samples: 3

Max nTPM: 384.5
Min nTPM: 295.7
Sample B Female 295.7
Sample C Male 384.5
Sample D Male 305.5
Superior colliculi
nTPM: 488.7
Samples: 4

Max nTPM: 631.2
Min nTPM: 231.9
Sample A Female 537.1
Sample B Female 231.9
Sample C Male 631.2
Sample D Male 554.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 220.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 220.0
Samples: 4

Max nTPM: 240.9
Min nTPM: 196.4
Sample A Male 196.4
Sample B Male 218.3
Sample C Female 240.9
Sample D Female 224.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 21.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 21.3
385775 Antisense, RP_040625_01_E03, Mouse strain C57BL/6J (56 days, male) 21.3

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