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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:582.1 nTPM
FANTOM5:1129.4 Scaled Tags Per Million
Pig:638.5 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA007316Antibody HPA007571Antibody CAB008636
Glial cells HighMediumHigh
Neuronal cells LowMediumMedium






CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

582.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 582.1
Samples: 246

Max nTPM: 1647.7
Min nTPM: 139.4
Std nTPM: 249.5
Median nTPM: 521.1
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 1647.7
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 1363.3
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 1254.2
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 1219.9
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 1190.0
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 1173.4
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 1155.2
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 1117.9
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 1114.9
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 1098.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 1090.2
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 1085.1
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 1076.4
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 1063.3
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 1058.7
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 1049.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 1020.5
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 1017.3
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 1004.8
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 996.5
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 971.0
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 967.2
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 954.4
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 953.5
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 944.1
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 931.7
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 919.6
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 899.6
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 898.5
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 876.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 871.8
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 857.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 854.3
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 848.4
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 847.5
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 844.7
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 842.3
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 841.8
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 834.9
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 829.8
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 828.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 827.5
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 826.7
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 824.2
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 820.4
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 805.3
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 801.7
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 800.4
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 800.2
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 790.9
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 784.9
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 779.1
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 774.6
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 773.0
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 771.8
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 765.2
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 758.4
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 745.0
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 741.9
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 734.5
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 723.7
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 720.4
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 710.4
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 710.1
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 705.6
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 703.7
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 703.6
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 703.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 692.9
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 680.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 680.6
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 680.5
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 678.9
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 675.6
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 672.4
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 668.1
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 658.9
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 656.9
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 649.7
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 647.3
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 645.5
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 645.2
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 644.5
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 644.2
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 643.4
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 642.6
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 638.4
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 632.8
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 631.1
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 627.2
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 625.7
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 622.5
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 621.2
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 621.1
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 619.4
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 607.7
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 602.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 598.1
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 586.5
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 584.8
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 577.4
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 575.6
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 573.9
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 573.5
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 570.5
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 570.3
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 569.3
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 567.9
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 565.7
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 562.5
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 552.0
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 551.4
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 551.0
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 550.7
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 547.8
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 545.6
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 545.6
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 538.6
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 536.4
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 533.6
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 529.0
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 527.6
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 523.5
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 518.7
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 516.8
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 516.5
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 514.6
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 514.1
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 511.8
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 511.4
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 509.3
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 508.4
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 506.6
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 505.9
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 505.1
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 504.9
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 502.0
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 499.0
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 498.7
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 495.2
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 494.0
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 493.4
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 492.6
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 492.5
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 491.8
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 491.4
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 491.0
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 488.5
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 484.4
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 483.6
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 481.1
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 474.5
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 472.3
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 469.8
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 469.3
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 466.8
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 461.6
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 458.9
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 453.3
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 450.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 447.8
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 446.0
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 435.6
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 435.6
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 432.6
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 429.5
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 427.7
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 427.1
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 425.0
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 421.8
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 417.7
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 416.3
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 415.6
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 415.0
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 414.2
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 410.9
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 409.8
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 407.9
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 406.6
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 406.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 403.0
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 402.1
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 396.7
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 394.9
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 393.8
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 389.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 387.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 385.7
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 384.2
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 379.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 378.9
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 376.9
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 375.8
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 375.1
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 374.2
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 373.7
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 371.2
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 370.9
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 370.2
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 368.9
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 360.8
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 358.8
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 358.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 355.8
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 352.5
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 348.4
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 347.6
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 345.5
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 342.4
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 342.3
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 338.3
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 337.9
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 333.9
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 333.3
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 332.1
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 330.9
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 330.4
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 330.0
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 325.9
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 324.5
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 322.9
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 319.8
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 319.1
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 316.8
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 316.7
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 316.4
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 315.2
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 315.0
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 313.3
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 303.3
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 296.8
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 294.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 291.8
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 278.9
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 276.8
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 273.6
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 248.9
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 241.8
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 210.7
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 206.4
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 205.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 190.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 158.8
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 148.5
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 144.1
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 139.4
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1129.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 1129.4
FF:10164-103B2 76 years, female 1129.4

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

638.5
Pig sample Sample description nTPM
Caudate
nTPM: 638.5
Samples: 4

Max nTPM: 838.3
Min nTPM: 452.7
Sample A Female 452.7
Sample B Female 622.8
Sample C Male 838.3
Sample D Male 640.1

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