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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:803.1 nTPM
HPA Brain:858.8 nTPM
GTEx:803.1 nTPM
FANTOM5:1056.1 Scaled Tags Per Million
Pig:373.2 nTPM
Mouse:617.2 nTPM
Allen mouse:32.6 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

858.8
Sample id Sample description nTPM
Amygdala
nTPM: 850.4
2695 Female, age 67, right hemisphere 1167.4
1987 Female, age 91, left hemisphere 879.9
2514 Male, age 75, right hemisphere 815.0
2517 Female, age 94, left hemisphere 737.3
2814 Male, age 76, right hemisphere 652.6
Basal amygdala
nTPM: 748.4
2609 Male, age 75, right hemisphere 937.4
2243 Female, age 91, right hemisphere 839.9
2110 Male, age 80, left hemisphere 757.0
2685 Female, age 94, left hemisphere 712.5
1955 Male, age 76, both hemispheres 709.7
2827 Female, age 67, right hemisphere 533.9
Central amygdala
nTPM: 858.8
2515 Male, age 75, right hemisphere 1186.8
2701 Female, age 91, right hemisphere 919.0
2239 Male, age 80, left hemisphere 777.4
2826 Female, age 94, left hemisphere 758.5
1905 Male, age 76, both hemispheres 652.4
Corticomedial amygdala
nTPM: 764.7
2428 Male, age 75, right hemisphere 976.2
2242 Female, age 91, right hemisphere 920.9
2829 Male, age 80, left hemisphere 864.4
2429 Female, age 94, left hemisphere 668.3
2240 Male, age 76, both hemispheres 636.3
2535 Female, age 67, right hemisphere 522.2
Lateral amygdala
nTPM: 703.8
2516 Male, age 75, right hemisphere 763.6
2255 Female, age 91, right hemisphere 759.9
1883 Male, age 76, both hemispheres 748.9
2256 Male, age 80, left hemisphere 713.5
2534 Female, age 94, left hemisphere 634.6
2830 Female, age 67, right hemisphere 602.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

803.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 803.1
Samples: 152

Max nTPM: 2298.6
Min nTPM: 51.0
Std nTPM: 353.3
Median nTPM: 758.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 2298.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1915.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 1738.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 1606.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1602.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1518.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1486.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1444.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 1437.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1430.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 1357.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 1319.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 1293.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1290.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 1261.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 1221.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 1210.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1207.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 1189.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 1189.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 1188.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 1177.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1163.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 1161.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 1146.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 1129.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 1122.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 1085.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1077.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 1069.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1045.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 1041.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1006.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1002.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 996.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 994.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 984.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 983.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 969.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 968.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 966.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 966.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 955.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 945.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 943.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 932.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 911.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 909.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 895.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 895.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 894.7
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 882.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 878.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 873.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 873.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 872.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 871.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 868.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 861.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 859.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 857.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 852.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 851.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 850.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 842.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 837.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 832.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 820.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 816.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 811.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 799.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 789.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 781.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 774.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 765.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 759.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 758.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 757.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 741.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 730.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 728.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 726.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 719.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 717.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 712.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 693.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 693.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 692.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 690.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 689.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 687.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 685.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 679.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 675.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 661.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 656.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 654.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 648.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 644.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 636.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 634.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 633.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 624.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 617.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 615.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 609.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 603.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 584.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 583.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 580.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 580.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 577.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 577.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 572.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 571.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 571.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 566.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 563.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 562.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 552.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 550.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 549.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 535.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 526.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 509.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 495.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 493.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 457.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 456.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 444.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 433.6
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 431.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 427.4
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 407.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 407.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 399.5
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 390.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 370.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 365.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 364.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 359.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 346.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 314.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 302.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 290.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 290.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 269.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 258.9
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 249.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 236.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 194.3
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 51.0
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1056.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 1056.1
FF:10151-102I7 76 years, female 1056.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

373.2
Pig sample Sample description nTPM
Amygdala
nTPM: 373.2
Samples: 4

Max nTPM: 536.9
Min nTPM: 255.3
Sample A Female 536.9
Sample B Female 255.3
Sample C Male 330.8
Sample D Male 369.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

617.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 617.2
Samples: 4

Max nTPM: 665.1
Min nTPM: 586.7
Sample A Male 665.1
Sample B Male 586.7
Sample C Female 613.8
Sample D Female 603.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

32.6
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 32.6
68196976 Antisense, RP_040928_01_A06, Mouse strain C57BL/6J (56 days, male) 35.4
67936207 Antisense, RP_040928_01_A06, Mouse strain C57BL/6J (56 days, male) 35.2
77414652 Antisense, RP_070205_01_H10, Mouse strain C57BL/6J (56 days, male) 29.8

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