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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:1013.3 nTPM
FANTOM5:706.7 Scaled Tags Per Million
Pig:378.8 nTPM
Allen mouse:14.8 Expression energy

MEDULLA OBLONGATA - Annotated protein expression
Pending normal tissue analysis

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1013.3
Sample id Sample description nTPM
Area postrema
nTPM: 1013.3
2799 Male, age 61, both hemispheres 1627.3
2306 Male, age 80, both hemispheres 789.7
2054 Male, age 76, both hemispheres 622.9
Dorsal medullary reticular nucleus
nTPM: 570.5
2373 Male, age 61, both hemispheres 628.9
2040 Female, age 85, both hemispheres 550.4
2088 Male, age 76, both hemispheres 532.3
Dorsal motor vagal complex
nTPM: 760.3
2797 Male, age 61, both hemispheres 1237.2
2844 Male, age 55, unknown 891.3
2813 Female, age 72, unknown 825.6
2643 Male, age 74, both hemispheres 791.9
2185 Male, age 76, both hemispheres 756.8
2000 Male, age 74, unknown 663.8
2133 Female, age 91, both hemispheres 607.4
2807 Female, age 85, both hemispheres 308.5
Gigantocellular reticular nuclei, medullary
nTPM: 541.3
2314 Male, age 61, both hemispheres 699.5
2462 Male, age 74, both hemispheres 629.9
1876 Female, age 85, both hemispheres 584.1
2387 Female, age 91, both hemispheres 553.4
2022 Male, age 76, right hemisphere 436.6
2310 Male, age 80, both hemispheres 343.9
Gigantocellular reticular nuclei, pars
nTPM: 510.1
2084 Female, age 85, both hemispheres 664.8
2336 Male, age 61, both hemispheres 558.7
2330 Male, age 80, both hemispheres 479.3
2706 Male, age 80, both hemispheres 472.1
2168 Male, age 76, both hemispheres 375.5
Inferior olive
nTPM: 991.4
2563 Male, age 74, both hemispheres 1136.9
2085 Female, age 85, both hemispheres 1133.9
2379 Male, age 80, both hemispheres 1001.8
2628 Female, age 91, both hemispheres 845.1
2178 Male, age 61, both hemispheres 839.4
Lateral medullary reticular nucleus
nTPM: 785.8
2804 Female, age 91, both hemispheres 1058.2
2852 Male, age 80, both hemispheres 860.8
2374 Male, age 61, both hemispheres 852.9
2305 Male, age 74, both hemispheres 780.4
2190 Female, age 85, both hemispheres 678.5
2044 Male, age 76, both hemispheres 484.1
Medial olivary nucleus
nTPM: 722.7
2138 Female, age 91, both hemispheres 1050.7
2851 Male, age 80, both hemispheres 737.8
1943 Male, age 61, both hemispheres 566.4
1962 Male, age 76, both hemispheres 536.2
Medial vestibular nucleus
nTPM: 595.5
2624 Male, age 61, both hemispheres 781.7
2801 Male, age 74, both hemispheres 661.7
2743 Female, age 85, both hemispheres 642.1
2093 Male, age 80, both hemispheres 513.3
2803 Female, age 91, both hemispheres 497.9
2134 Male, age 76, both hemispheres 476.2
Motor hypoglossal nucleus
nTPM: 556.7
2277 Male, age 76, both hemispheres 742.9
2461 Male, age 61, both hemispheres 713.7
2125 Female, age 91, both hemispheres 609.6
2182 Male, age 80, both hemispheres 412.6
2132 Female, age 85, both hemispheres 304.7
Nucleus ambiguus
nTPM: 694.1
2071 Male, age 76, both hemispheres 892.3
2096 Female, age 85, both hemispheres 495.9
Nucleus cuneatus
nTPM: 654.9
2564 Male, age 74, both hemispheres 1005.0
2562 Male, age 61, both hemispheres 853.8
2805 Female, age 91, both hemispheres 661.4
2380 Male, age 80, both hemispheres 647.9
2131 Male, age 76, both hemispheres 617.6
2376 Male, age 61, both hemispheres 553.6
2100 Male, age 76, both hemispheres 527.9
2808 Female, age 85, both hemispheres 514.1
2381 Male, age 80, both hemispheres 512.9
Nucleus gracilis
nTPM: 632.9
2627 Male, age 74, both hemispheres 877.9
2299 Female, age 85, both hemispheres 531.6
2382 Male, age 80, both hemispheres 489.3
Nucleus raphe obscurus
nTPM: 623.3
2142 Male, age 76, midline 732.8
2800 Male, age 61, midline 570.3
2845 Female, age 85, midline 566.8
Nucleus raphe pallidus
nTPM: 641.9
1924 Male, age 61, midline 692.7
2145 Male, age 76, midline 685.0
2183 Male, age 80, midline 548.2
Nucleus tractus solitarii
nTPM: 538.9
2656 Male, age 76, both hemispheres 712.1
2144 Female, age 91, right hemisphere 570.6
2307 Male, age 80, both hemispheres 442.6
2191 Female, age 85, both hemispheres 430.3
Parvicellular reticular nuclei
nTPM: 545.8
2119 Male, age 80, both hemispheres 654.7
2558 Male, age 74, both hemispheres 514.8
2095 Male, age 76, both hemispheres 468.0
Parvicellular reticular nuclei, medullary
nTPM: 523.5
2091 Female, age 85, both hemispheres 552.7
2181 Male, age 80, left hemisphere 524.1
2189 Female, age 91, both hemispheres 493.6
Peritrigeminal nucleus
nTPM: 679.3
2067 Female, age 85, both hemispheres 823.4
2136 Male, age 76, both hemispheres 622.6
2179 Male, age 61, both hemispheres 591.9
Prepositus hypoglossal nucleus
nTPM: 615.6
2086 Male, age 80, both hemispheres 689.5
2855 Female, age 85, right hemisphere 541.6
Spinal trigeminal nucleus, caudal
nTPM: 580.2
2642 Male, age 74, both hemispheres 652.8
2308 Male, age 80, both hemispheres 626.3
2447 Male, age 76, both hemispheres 574.4
2390 Female, age 91, both hemispheres 527.4
2312 Male, age 61, both hemispheres 520.0
Spinal trigeminal nucleus, interpolar
nTPM: 537.0
2625 Male, age 61, both hemispheres 818.2
2033 Male, age 80, both hemispheres 502.4
2386 Female, age 85, both hemispheres 488.1
2389 Female, age 91, both hemispheres 441.2
2066 Male, age 76, right hemisphere 435.2
Spinal vestibular nucleus
nTPM: 534.6
2796 Male, age 61, both hemispheres 699.6
2806 Female, age 85, both hemispheres 578.9
2186 Female, age 91, both hemispheres 517.4
2780 Male, age 80, both hemispheres 498.4
2384 Male, age 74, both hemispheres 496.1
2748 Male, age 76, both hemispheres 417.1
Superior vestibular nucleus
nTPM: 644.9
2383 Male, age 74, both hemispheres 726.0
2061 Male, age 76, both hemispheres 615.6
2015 Male, age 80, both hemispheres 593.1
Ventral medullary reticular nucleus
nTPM: 662.0
2372 Male, age 61, both hemispheres 836.9
2060 Male, age 76, both hemispheres 487.1
Ventrolateral medulla, A1-C1 cell groups
nTPM: 658.4
2302 Female, age 91, both hemispheres 969.7
2180 Male, age 61, both hemispheres 652.5
2741 Female, age 85, both hemispheres 588.3
2118 Male, age 80, both hemispheres 559.4
1986 Male, age 76, both hemispheres 522.2

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

706.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 706.7
FF:10038-101F2 18-64 years, mixed 808.8
FF:10174-103C3 60 years, female 706.2
FF:10155-103A2 76 years, female 605.0

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

378.8
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 378.8
Samples: 4

Max nTPM: 436.8
Min nTPM: 300.5
Sample A Female 374.5
Sample B Female 300.5
Sample C Male 403.4
Sample D Male 436.8

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

14.8
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 14.8
67936207 Antisense, RP_040928_01_A06, Mouse strain C57BL/6J (56 days, male) 18.6
68196976 Antisense, RP_040928_01_A06, Mouse strain C57BL/6J (56 days, male) 11.8
77414652 Antisense, RP_070205_01_H10, Mouse strain C57BL/6J (56 days, male) 11.1

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