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TMBIM1
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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:88.6 nTPM
FANTOM5:264.8 Scaled Tags Per Million
Pig:24.9 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA012093
Glial cells Not detected
Neuronal cells Low



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

88.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 88.6
Samples: 246

Max nTPM: 357.4
Min nTPM: 12.8
Std nTPM: 59.8
Median nTPM: 71.6
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 357.4
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 352.5
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 348.9
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 329.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 301.1
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 286.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 284.5
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 258.9
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 251.5
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 230.4
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 227.2
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 215.1
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 199.9
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 194.6
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 194.2
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 189.9
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 186.1
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 184.7
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 175.5
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 174.4
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 173.6
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 165.0
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 160.7
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 159.7
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 159.5
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 158.3
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 156.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 155.5
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 155.4
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 148.4
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 147.6
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 145.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 142.6
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 142.3
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 139.1
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 137.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 137.8
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 137.8
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 135.3
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 133.3
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 132.7
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 124.7
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 124.6
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 124.1
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 123.2
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 123.0
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 119.5
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 118.5
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 112.5
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 112.4
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 110.5
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 110.2
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 108.8
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 108.5
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 108.5
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 107.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 105.5
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 105.4
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 104.5
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 104.5
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 104.3
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 104.3
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 104.2
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 104.2
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 104.0
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 104.0
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 103.0
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 102.5
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 101.8
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 101.7
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 100.5
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 100.1
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 100.0
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 99.2
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 98.9
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 97.6
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 97.5
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 95.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 92.5
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 91.4
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 90.7
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 88.0
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 87.7
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 87.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 85.6
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 85.1
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 84.0
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 84.0
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 83.6
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 83.3
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 82.5
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 82.5
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 81.6
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 81.3
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 80.8
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 80.7
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 80.4
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 79.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 79.1
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 79.0
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 78.8
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 78.3
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 77.8
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 77.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 77.3
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 76.9
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 76.2
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 75.7
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 75.3
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 74.8
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 74.6
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 74.5
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 74.4
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 74.1
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 73.7
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 73.1
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 73.1
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 72.4
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 72.3
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 72.3
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 72.1
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 71.9
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 71.7
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 71.5
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 71.3
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 71.1
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 71.1
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 69.5
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 68.7
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 68.5
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 68.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 68.1
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 67.5
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 67.2
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 66.8
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 66.6
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 66.5
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 66.4
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 65.8
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 65.6
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 65.1
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 64.8
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 64.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 64.0
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 63.7
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 63.5
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 63.2
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 63.0
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 61.4
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 61.2
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 61.2
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 60.8
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 60.8
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 60.6
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 59.4
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 59.1
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 58.8
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 58.8
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 58.6
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 58.5
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 57.9
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 57.8
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 57.5
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 56.9
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 55.3
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 55.2
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 55.2
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 55.2
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 55.1
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 55.0
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 54.2
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 54.2
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 54.2
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 54.1
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 54.0
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 53.9
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 53.5
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 53.1
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 52.7
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 52.5
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 51.9
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 51.5
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 51.3
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 51.1
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 51.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 50.7
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 50.2
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 50.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 49.9
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 49.6
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 49.4
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 49.3
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 49.0
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 48.8
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 48.5
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 48.4
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 48.4
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 47.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 47.0
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 45.3
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 45.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 45.0
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 44.8
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 44.7
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 44.6
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 44.5
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 44.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 44.4
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 44.4
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 43.8
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 43.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 43.2
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 42.9
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 42.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 42.1
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 41.9
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 41.3
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 40.7
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 39.6
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 39.6
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 39.4
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 38.6
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 38.5
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 38.3
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 37.3
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 36.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 36.3
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 36.0
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 35.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 35.2
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 34.3
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 33.7
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 33.7
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 33.4
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 33.2
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 32.3
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 30.7
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 30.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 30.0
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 29.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 28.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 26.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 23.8
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 23.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 17.5
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 12.8
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

264.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 264.8
FF:10164-103B2 76 years, female 264.8

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

24.9
Pig sample Sample description nTPM
Caudate
nTPM: 24.9
Samples: 4

Max nTPM: 26.3
Min nTPM: 23.6
Sample A Female 23.6
Sample B Female 26.3
Sample C Male 25.8
Sample D Male 23.7

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