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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:208.4 nTPM
GTEx:208.4 nTPM
FANTOM5:263.0 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA012093
Squamous epithelial cells High



VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

208.4
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 208.4
Samples: 156

Max nTPM: 828.2
Min nTPM: 78.1
Std nTPM: 108.4
Median nTPM: 169.1
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 828.2
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 480.7
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 472.6
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 461.9
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 449.0
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 438.9
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 429.3
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 427.7
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 413.0
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 410.5
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 407.6
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 401.3
GTEX-11I78-2026-SM-5987C 50-59 years, female 379.1
GTEX-14PKU-1326-SM-6871B 40-49 years, female 368.2
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 360.1
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 351.9
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 349.4
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 344.6
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 344.3
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 338.9
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 336.6
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 327.8
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 326.2
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 324.4
GTEX-S341-1226-SM-4AD5S 40-49 years, female 313.5
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 311.3
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 305.9
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 295.8
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 292.9
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 285.6
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 281.0
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 278.1
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 274.8
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 274.3
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 274.1
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 273.6
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 267.1
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 262.1
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 259.7
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 257.2
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 255.4
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 251.2
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 249.4
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 245.2
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 244.2
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 242.9
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 241.5
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 241.2
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 239.8
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 236.9
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 236.6
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 233.4
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 233.4
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 232.4
GTEX-1C475-0526-SM-793AC 40-49 years, female 231.7
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 231.6
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 226.3
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 219.7
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 215.9
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 210.0
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 208.1
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 206.8
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 205.1
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 203.4
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 199.8
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 198.7
GTEX-QCQG-1226-SM-48U23 50-59 years, female 197.3
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 196.4
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 194.1
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 193.1
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 191.3
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 188.8
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 182.3
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 176.7
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 176.6
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 175.3
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 172.8
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 170.7
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 167.5
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 165.0
GTEX-16NPV-2526-SM-6M483 50-59 years, female 164.6
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 164.1
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 164.0
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 163.2
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 162.2
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 161.5
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 161.4
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 160.8
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 158.7
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 155.3
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 155.3
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 155.0
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 154.2
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 153.0
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 152.3
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 151.4
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 150.7
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 148.3
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 147.7
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 147.4
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 145.3
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 143.7
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 142.8
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 142.3
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 140.0
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 138.5
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 138.1
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 137.2
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 137.1
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 135.4
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 133.4
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 132.0
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 132.0
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 131.8
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 131.0
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 128.9
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 128.3
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 128.3
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 128.3
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 126.7
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 126.6
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 124.4
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 122.6
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 122.6
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 120.8
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 118.6
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 118.3
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 117.9
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 117.6
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 116.4
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 116.2
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 116.1
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 114.9
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 114.5
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 113.6
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 113.2
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 112.8
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 111.6
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 111.1
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 110.8
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 110.6
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 108.4
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 108.2
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 106.6
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 106.2
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 103.5
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 101.5
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 100.7
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 96.6
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 96.6
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 95.1
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 92.8
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 92.0
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 89.9
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 85.4
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 78.1
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

263.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 263.0
FF:10204-103F6 68 years, female 263.0

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