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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:124.1 nTPM
HPA Brain:165.1 nTPM
GTEx:124.1 nTPM
FANTOM5:162.9 Scaled Tags Per Million
Pig:330.1 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

165.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 162.1
2194 Female, age 79, both hemispheres 214.3
1981 Female, age 72, midline 193.3
2048 Male, age 55, midline 146.7
2816 Male, age 47, midline 129.3
2565 Male, age 75, midline 127.1
Cervical spinal cord, dorsal horn
nTPM: 151.5
2173 Female, age 72, unknown 235.8
2721 Male, age 90, both hemispheres 162.1
2069 Male, age 47, both hemispheres 149.9
2297 Male, age 75, both hemispheres 142.4
1877 Male, age 55, unknown 110.0
2296 Male, age 66, both hemispheres 109.1
Cervical spinal cord, ventral horn
nTPM: 165.1
2068 Male, age 55, unknown 211.3
2820 Female, age 79, both hemispheres 189.5
2098 Female, age 72, unknown 167.9
2295 Male, age 66, both hemispheres 142.9
2809 Male, age 90, both hemispheres 140.3
2480 Male, age 75, both hemispheres 138.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

124.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 124.1
Samples: 159

Max nTPM: 393.0
Min nTPM: 70.6
Std nTPM: 46.9
Median nTPM: 110.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 393.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 386.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 249.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 240.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 218.6
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 217.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 216.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 216.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 211.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 207.6
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 207.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 206.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 190.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 190.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 182.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 180.6
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 179.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 177.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 177.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 166.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 166.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 165.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 164.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 163.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 162.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 162.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 149.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 147.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 147.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 147.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 144.8
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 143.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 141.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 141.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 140.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 139.2
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 138.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 138.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 138.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 137.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 135.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 133.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 132.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 132.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 131.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 128.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 127.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 127.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 126.1
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 125.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 125.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 125.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 125.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 123.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 123.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 123.2
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 122.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 122.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 122.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 119.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 119.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 118.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 118.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 118.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 118.2
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 117.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 116.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 115.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 115.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 114.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 114.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 113.6
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 113.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 113.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 112.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 112.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 112.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 112.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 111.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 110.9
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 110.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 109.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 109.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 109.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 108.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 108.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 108.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 107.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 107.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 105.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 105.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 105.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 105.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 105.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 104.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 104.0
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 103.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 103.3
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 103.1
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 102.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 102.7
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 101.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 101.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 101.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 100.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 99.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 99.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 98.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 98.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 98.1
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 98.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 98.0
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 97.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 97.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 97.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 96.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 96.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 96.1
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 96.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 95.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 94.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 94.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 94.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 93.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 93.7
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 93.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 93.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 93.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 93.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 92.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 92.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 91.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 91.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 89.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 88.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 88.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 88.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 88.4
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 88.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 88.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 87.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 87.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 87.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 86.8
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 86.2
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 86.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 86.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 85.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 84.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 84.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 82.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 81.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 81.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 80.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 80.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 78.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 76.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 70.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 70.6
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

162.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 162.9
FF:10181-103D1 60 years, female 209.0
FF:10159-103A6 76 years, female 116.7

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

330.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 291.1
Samples: 4

Max nTPM: 345.7
Min nTPM: 244.1
Sample A Female 244.1
Sample B Female 260.0
Sample C Male 345.7
Sample D Male 314.7
Ventral spinal cord
nTPM: 330.1
Samples: 4

Max nTPM: 426.2
Min nTPM: 258.1
Sample A Female 258.1
Sample B Female 306.9
Sample C Male 426.2
Sample D Male 329.1

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