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ITM2B
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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:267.6 nTPM
FANTOM5:799.1 Scaled Tags Per Million
Pig:386.5 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA029292Antibody HPA071992
Glial cells LowMedium
Neuronal cells MediumMedium





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

267.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 267.6
Samples: 246

Max nTPM: 586.7
Min nTPM: 182.1
Std nTPM: 47.1
Median nTPM: 259.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 586.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 419.6
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 398.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 393.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 385.3
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 374.2
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 370.6
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 369.0
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 368.6
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 365.0
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 364.5
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 362.1
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 355.3
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 345.5
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 341.7
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 339.3
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 338.3
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 337.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 333.8
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 333.7
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 332.1
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 331.9
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 329.2
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 328.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 326.1
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 325.7
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 323.7
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 323.3
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 322.4
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 322.2
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 321.9
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 321.8
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 321.7
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 315.7
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 315.6
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 314.6
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 314.5
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 313.4
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 310.6
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 310.4
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 307.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 306.4
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 302.1
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 301.9
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 298.8
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 298.5
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 298.5
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 298.2
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 296.0
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 295.9
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 295.0
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 292.8
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 292.2
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 292.1
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 291.9
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 291.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 291.6
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 291.3
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 290.4
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 289.7
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 288.8
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 288.4
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 288.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 287.7
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 287.2
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 285.6
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 285.3
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 285.2
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 284.5
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 284.1
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 283.1
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 282.1
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 281.9
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 281.9
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 281.8
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 281.5
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 281.5
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 281.0
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 281.0
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 280.3
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 279.5
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 279.4
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 278.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 277.0
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 276.4
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 275.0
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 275.0
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 274.8
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 274.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 274.4
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 272.7
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 272.4
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 271.3
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 271.0
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 271.0
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 270.9
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 270.2
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 269.5
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 269.4
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 268.5
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 268.1
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 268.0
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 267.1
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 266.7
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 266.7
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 266.3
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 266.0
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 266.0
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 265.7
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 265.5
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 265.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 264.5
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 264.4
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 264.2
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 263.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 263.5
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 263.0
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 262.6
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 262.6
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 261.9
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 260.1
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 259.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 259.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 259.4
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 259.1
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 258.2
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 257.3
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 257.0
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 256.8
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 256.8
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 256.8
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 256.6
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 256.4
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 255.7
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 255.1
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 254.9
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 254.4
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 253.6
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 253.4
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 253.4
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 252.9
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 252.2
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 251.7
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 251.5
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 251.3
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 250.9
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 250.7
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 250.5
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 250.1
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 249.6
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 249.5
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 249.1
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 248.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 248.6
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 248.2
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 248.0
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 247.9
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 247.9
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 247.7
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 247.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 247.1
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 246.8
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 245.6
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 245.5
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 245.1
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 244.8
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 244.3
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 244.1
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 243.7
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 243.4
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 242.6
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 242.5
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 242.2
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 242.0
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 241.6
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 241.6
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 241.6
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 241.4
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 241.1
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 241.0
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 240.5
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 240.4
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 240.3
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 240.2
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 239.2
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 238.5
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 238.2
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 238.1
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 238.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 238.0
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 237.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 236.8
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 236.4
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 236.0
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 234.7
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 233.7
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 233.6
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 233.5
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 232.9
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 231.7
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 231.4
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 229.6
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 229.2
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 228.9
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 226.6
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 226.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 225.8
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 225.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 224.7
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 224.3
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 223.9
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 223.1
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 222.7
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 222.3
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 221.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 220.6
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 220.3
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 219.8
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 219.1
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 218.9
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 218.8
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 217.8
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 214.4
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 213.0
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 212.5
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 212.5
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 212.4
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 210.3
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 210.2
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 209.4
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 209.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 207.1
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 205.9
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 205.5
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 203.9
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 203.8
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 203.6
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 203.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 201.4
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 200.9
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 198.2
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 197.7
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 195.9
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 193.8
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 189.6
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 182.1
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

799.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 799.1
FF:10164-103B2 76 years, female 799.1

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

386.5
Pig sample Sample description nTPM
Caudate
nTPM: 386.6
Samples: 4

Max nTPM: 440.8
Min nTPM: 334.3
Sample A Female 406.4
Sample B Female 364.7
Sample C Male 440.8
Sample D Male 334.3

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