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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:279.3 nTPM
HPA:279.3 nTPM
GTEx:211.3 nTPM
FANTOM5:1764.4 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA029292Antibody HPA071992
Glandular cells MediumHigh





SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

279.3
overview
Male, age 65
Small intestine sample 232
nTPM: 315.5
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 248.9
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 266.3
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 286.4

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

211.3
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 211.3
Samples: 187

Max nTPM: 393.6
Min nTPM: 100.1
Std nTPM: 55.4
Median nTPM: 206.5
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 393.6
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 359.3
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 344.4
GTEX-111YS-1426-SM-5GID8 60-69 years, male 343.9
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 339.8
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 329.1
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 317.4
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 316.5
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 313.9
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 312.1
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 311.0
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 308.0
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 307.1
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 305.6
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 303.3
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 303.1
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 303.0
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 301.9
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 300.9
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 298.1
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 290.0
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 288.1
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 285.3
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 282.1
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 279.5
GTEX-14PN3-2026-SM-68729 60-69 years, female 277.1
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 276.0
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 272.2
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 271.6
GTEX-1192X-2526-SM-59868 50-59 years, male 270.4
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 270.1
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 269.4
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 259.6
GTEX-144GM-1026-SM-79OKU 20-29 years, male 258.1
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 257.8
GTEX-13113-1226-SM-5EGHT 60-69 years, female 257.3
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 256.5
GTEX-YFCO-1326-SM-664NV 40-49 years, male 256.5
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 255.0
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 254.3
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 253.5
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 252.9
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 251.4
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 249.8
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 249.5
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 249.0
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 246.4
GTEX-1C475-1426-SM-793CH 40-49 years, female 242.3
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 241.8
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 241.3
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 239.5
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 239.1
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 238.8
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 238.0
GTEX-14PK6-1626-SM-6871I 70-79 years, female 236.2
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 235.7
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 235.5
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 233.5
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 232.6
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 231.4
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 231.2
GTEX-1122O-1326-SM-5H11F 60-69 years, female 228.1
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 228.0
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 227.2
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 226.2
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 225.7
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 224.1
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 223.8
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 223.3
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 221.4
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 221.3
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 221.0
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 220.5
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 220.2
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 219.4
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 219.2
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 218.5
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 217.4
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 214.6
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 213.3
GTEX-14PKU-1626-SM-6871C 40-49 years, female 213.2
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 212.0
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 212.0
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 211.9
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 211.3
GTEX-ZTSS-0926-SM-59865 40-49 years, male 210.4
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 210.0
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 209.7
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 209.0
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 208.6
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 207.8
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 207.5
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 207.5
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 206.5
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 204.2
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 203.6
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 203.4
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 201.7
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 201.6
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 200.6
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 200.2
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 198.6
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 197.7
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 195.9
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 195.0
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 194.9
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 194.8
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 194.6
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 193.0
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 192.9
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 192.7
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 192.0
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 189.2
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 187.1
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 186.5
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 186.2
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 185.9
GTEX-13O61-1326-SM-5KM31 60-69 years, male 183.3
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 183.1
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 181.4
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 181.2
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 179.5
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 179.2
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 178.4
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 176.3
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 176.1
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 175.2
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 174.7
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 174.0
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 173.4
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 173.0
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 172.5
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 171.7
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 169.9
GTEX-13111-1426-SM-5DUW3 50-59 years, male 169.8
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 169.6
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 169.1
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 168.9
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 168.5
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 167.8
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 166.4
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 166.4
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 164.6
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 164.6
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 164.3
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 164.1
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 163.9
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 163.4
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 163.1
GTEX-117YX-0326-SM-5GICL 50-59 years, male 162.6
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 162.3
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 161.4
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 161.3
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 161.2
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 160.6
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 157.5
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 157.0
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 156.3
GTEX-183FY-1626-SM-793D8 20-29 years, male 154.7
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 152.6
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 151.8
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 151.2
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 150.7
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 150.6
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 149.7
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 149.7
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 149.5
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 148.7
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 148.1
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 146.3
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 146.2
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 145.5
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 144.4
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 144.1
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 143.5
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 141.6
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 141.5
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 141.2
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 136.4
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 131.3
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 130.4
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 129.6
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 129.3
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 128.6
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 125.8
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 109.7
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 100.1
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1764.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 1764.4
FF:10024-101D6 15,40,85 years, mixed 1764.4

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