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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:90.4 nTPM
HPA Brain:199.4 nTPM
GTEx:90.4 nTPM
FANTOM5:143.3 Scaled Tags Per Million
Pig:83.4 nTPM
Mouse:100.5 nTPM
Allen mouse:13.1 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

199.4
Sample id Sample description nTPM
Amygdala
nTPM: 199.4
2514 Male, age 75, right hemisphere 228.5
2695 Female, age 67, right hemisphere 223.9
1987 Female, age 91, left hemisphere 200.4
2814 Male, age 76, right hemisphere 180.6
2517 Female, age 94, left hemisphere 163.8
Basal amygdala
nTPM: 175.8
2609 Male, age 75, right hemisphere 272.1
2243 Female, age 91, right hemisphere 176.0
2110 Male, age 80, left hemisphere 173.6
1955 Male, age 76, both hemispheres 158.7
2685 Female, age 94, left hemisphere 143.0
2827 Female, age 67, right hemisphere 131.3
Central amygdala
nTPM: 185.1
2515 Male, age 75, right hemisphere 242.0
2826 Female, age 94, left hemisphere 195.1
1905 Male, age 76, both hemispheres 185.1
2239 Male, age 80, left hemisphere 156.2
2701 Female, age 91, right hemisphere 147.1
Corticomedial amygdala
nTPM: 183.6
2428 Male, age 75, right hemisphere 275.3
2829 Male, age 80, left hemisphere 190.4
2242 Female, age 91, right hemisphere 174.1
2240 Male, age 76, both hemispheres 173.9
2429 Female, age 94, left hemisphere 161.4
2535 Female, age 67, right hemisphere 126.6
Lateral amygdala
nTPM: 172.8
2516 Male, age 75, right hemisphere 246.4
1883 Male, age 76, both hemispheres 188.7
2534 Female, age 94, left hemisphere 158.5
2830 Female, age 67, right hemisphere 156.8
2255 Female, age 91, right hemisphere 148.8
2256 Male, age 80, left hemisphere 137.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

90.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 90.4
Samples: 152

Max nTPM: 140.5
Min nTPM: 13.3
Std nTPM: 18.6
Median nTPM: 90.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 140.5
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 136.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 131.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 126.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 124.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 124.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 120.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 120.4
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 119.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 117.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 115.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 115.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 115.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 114.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 113.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 113.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 111.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 111.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 110.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 109.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 109.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 109.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 108.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 108.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 108.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 108.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 107.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 106.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 106.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 105.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 105.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 104.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 104.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 104.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 104.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 103.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 103.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 103.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 102.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 102.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 102.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 101.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 101.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 100.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 100.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 100.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 100.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 99.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 99.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 99.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 99.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 99.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 99.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 98.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 98.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 98.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 98.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 98.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 97.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 97.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 96.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 95.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 95.0
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 95.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 94.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 94.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 93.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 93.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 92.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 92.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 91.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 91.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 91.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 91.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 91.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 90.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 90.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 90.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 90.0
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 89.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 89.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 89.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 89.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 88.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 88.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 87.8
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 87.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 86.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 85.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 85.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 85.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 84.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 84.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 83.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 83.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 83.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 83.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 83.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 83.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 81.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 81.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 81.4
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 81.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 81.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 81.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 80.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 80.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 80.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 80.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 79.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 79.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 78.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 78.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 78.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 77.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 77.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 77.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 77.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 76.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 76.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 74.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 74.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 74.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 73.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 73.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 73.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 73.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 72.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 72.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 72.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 72.5
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 72.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 72.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 71.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 71.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 69.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 69.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 67.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 66.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 65.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 64.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 64.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 64.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 63.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 61.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 59.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 58.4
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 56.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 52.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 50.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 49.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 13.3
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

143.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 143.3
FF:10151-102I7 76 years, female 143.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

83.4
Pig sample Sample description nTPM
Amygdala
nTPM: 83.4
Samples: 4

Max nTPM: 105.8
Min nTPM: 67.4
Sample A Female 105.8
Sample B Female 67.4
Sample C Male 79.4
Sample D Male 80.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

100.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 100.5
Samples: 4

Max nTPM: 110.1
Min nTPM: 90.5
Sample A Male 110.1
Sample B Male 99.7
Sample C Female 101.5
Sample D Female 90.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

13.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 13.1
74357551 Antisense, RP_051214_01_B03, Mouse strain C57BL/6J (56 days, male) 16.1
68795416 Antisense, RP_041122_01_C04, Mouse strain C57BL/6J (56 days, male) 10.1

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