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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:303.0 nTPM
HPA Brain:230.9 nTPM
GTEx:303.0 nTPM
FANTOM5:247.9 Scaled Tags Per Million
Pig:382.8 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

230.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 177.9
1981 Female, age 72, midline 215.9
2048 Male, age 55, midline 177.1
2565 Male, age 75, midline 176.7
2194 Female, age 79, both hemispheres 166.7
2816 Male, age 47, midline 153.2
Cervical spinal cord, dorsal horn
nTPM: 214.0
2173 Female, age 72, unknown 258.9
2296 Male, age 66, both hemispheres 251.8
2069 Male, age 47, both hemispheres 241.5
2297 Male, age 75, both hemispheres 208.8
1877 Male, age 55, unknown 185.9
2721 Male, age 90, both hemispheres 137.1
Cervical spinal cord, ventral horn
nTPM: 230.9
2480 Male, age 75, both hemispheres 313.2
2809 Male, age 90, both hemispheres 280.4
2295 Male, age 66, both hemispheres 244.4
2098 Female, age 72, unknown 215.1
2068 Male, age 55, unknown 191.3
2820 Female, age 79, both hemispheres 141.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

303.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 303.0
Samples: 159

Max nTPM: 598.6
Min nTPM: 160.2
Std nTPM: 81.0
Median nTPM: 287.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 598.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 588.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 542.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 485.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 476.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 475.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 473.8
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 469.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 440.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 440.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 438.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 430.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 429.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 427.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 418.8
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 416.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 414.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 408.0
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 399.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 397.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 396.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 388.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 386.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 382.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 382.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 379.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 379.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 375.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 372.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 370.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 363.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 363.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 362.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 361.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 360.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 354.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 354.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 347.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 346.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 345.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 345.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 344.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 344.5
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 344.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 341.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 339.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 338.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 337.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 334.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 329.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 328.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 327.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 326.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 324.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 324.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 322.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 321.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 318.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 318.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 318.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 318.0
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 314.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 314.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 314.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 312.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 309.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 308.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 304.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 301.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 300.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 298.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 296.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 295.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 294.4
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 294.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 293.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 291.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 290.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 288.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 287.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 284.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 283.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 281.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 281.6
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 280.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 278.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 278.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 276.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 275.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 274.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 274.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 274.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 272.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 271.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 270.0
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 269.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 268.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 268.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 266.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 265.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 264.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 263.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 260.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 258.7
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 257.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 256.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 254.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 253.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 253.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 253.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 253.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 253.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 252.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 252.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 252.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 251.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 251.8
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 251.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 247.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 247.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 247.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 245.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 245.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 243.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 242.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 242.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 235.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 233.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 229.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 228.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 228.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 227.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 227.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 226.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 225.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 224.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 224.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 223.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 220.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 218.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 217.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 217.0
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 217.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 214.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 211.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 211.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 209.6
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 208.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 205.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 202.5
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 196.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 195.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 189.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 184.5
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 183.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 179.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 172.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 170.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 160.2
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

247.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 247.9
FF:10181-103D1 60 years, female 264.7
FF:10159-103A6 76 years, female 231.0

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

382.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 355.8
Samples: 4

Max nTPM: 426.9
Min nTPM: 303.4
Sample A Female 303.4
Sample B Female 351.2
Sample C Male 426.9
Sample D Male 341.7
Ventral spinal cord
nTPM: 382.8
Samples: 4

Max nTPM: 428.9
Min nTPM: 361.3
Sample A Female 361.3
Sample B Female 362.4
Sample C Male 378.6
Sample D Male 428.9

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