MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:188.8 nTPM
HPA Brain:279.7 nTPM
GTEx:188.8 nTPM
FANTOM5:359.6 Scaled Tags Per Million
Pig:239.8 nTPM
Mouse:180.2 nTPM
Allen mouse:16.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 279.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 243.3
2586 Male, age 75, left hemisphere 336.9
1830 Male, age 51, unknown 260.7
2411 Female, age 72, unknown 255.7
2666 Male, age 74, left hemisphere 251.6
1833 Male, age 53, unknown 249.5
2019 Male, age 18, unknown 234.6
2828 Female, age 72, unknown 232.0
1870 Female, age 42, unknown 230.8
1827 Male, age 72, unknown 215.0
2219 Male, age 76, both hemispheres 165.8
Dorsal raphe nucleus
nTPM: 177.5
2750 Male, age 76, both hemispheres 261.6
1828 Male, age 53, unknown 174.4
2016 Female, age 72, unknown 165.7
2047 Male, age 72, unknown 144.8
2298 Female, age 72, unknown 141.1
Inferior colliculus
nTPM: 169.1
2849 Male, age 72, unknown 180.9
1890 Male, age 53, unknown 171.5
1848 Female, age 42, unknown 164.2
2097 Female, age 72, unknown 159.6
Median raphe nucleus
nTPM: 152.5
2220 Male, age 76, midline 152.5
Periaquaductal grey, anterior
nTPM: 184.4
1947 Male, age 18, unknown 198.3
1795 Male, age 51, unknown 180.2
2502 Female, age 75, unknown 174.8
Periaquaductal grey, dorsal
nTPM: 142.9
2464 Female, age 72, unknown 195.7
1831 Male, age 72, unknown 159.3
1840 Male, age 53, unknown 126.2
2850 Male, age 76, both hemispheres 90.4
Periaquaductal grey, lateral
nTPM: 149.9
2272 Male, age 74, both hemispheres 167.6
2053 Male, age 18, unknown 166.7
2140 Male, age 76, both hemispheres 115.4
Pretectal area
nTPM: 199.6
2407 Male, age 75, both hemispheres 261.7
2316 Male, age 76, right hemisphere 250.0
1815 Male, age 53, unknown 243.7
2007 Male, age 72, unknown 236.5
1817 Female, age 42, unknown 207.9
2825 Male, age 18, unknown 189.0
1816 Male, age 51, unknown 188.3
1944 Female, age 72, unknown 176.9
2667 Female, age 75, unknown 153.6
2224 Female, age 72, unknown 149.5
2273 Male, age 74, both hemispheres 138.8
Red nucleus
nTPM: 279.7
2823 Male, age 76, right hemisphere 314.1
1904 Male, age 53, unknown 310.7
2584 Male, age 75, left hemisphere 306.2
2503 Female, age 72, unknown 304.5
1865 Male, age 51, unknown 298.3
2785 Male, age 18, unknown 279.9
2227 Male, age 72, unknown 276.3
2588 Male, age 74, left hemisphere 275.7
2769 Male, age 72, unknown 269.7
2725 Female, age 75, unknown 249.3
1821 Female, age 72, unknown 240.5
1954 Female, age 42, unknown 230.7
Substantia nigra
nTPM: 218.8
2583 Male, age 75, right hemisphere 288.6
2590 Female, age 75, unknown 271.9
1851 Male, age 51, unknown 230.3
2409 Female, age 72, unknown 217.7
2665 Male, age 74, both hemispheres 210.7
1916 Female, age 42, unknown 207.2
1889 Female, age 72, unknown 205.2
2699 Male, age 18, unknown 204.2
1941 Male, age 53, unknown 189.5
2241 Male, age 72, unknown 163.1
Superior colliculus
nTPM: 236.3
1995 Male, age 72, unknown 285.0
1913 Female, age 42, unknown 278.0
2668 Female, age 75, unknown 277.8
1895 Male, age 76, right hemisphere 261.2
1796 Male, age 53, unknown 224.5
2664 Male, age 75, both hemispheres 223.6
2261 Male, age 18, unknown 213.9
1839 Male, age 51, unknown 210.0
2587 Male, age 74, left hemisphere 205.8
2087 Female, age 72, unknown 182.5
Ventral tegmental area
nTPM: 192.9
2410 Female, age 72, unknown 243.5
2223 Female, age 72, unknown 195.5
1915 Female, age 42, unknown 194.9
1942 Male, age 51, unknown 182.0
2218 Male, age 76, both hemispheres 174.7
2021 Male, age 53, unknown 166.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 188.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 188.8
Samples: 139

Max nTPM: 506.1
Min nTPM: 83.4
Std nTPM: 71.3
Median nTPM: 174.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 506.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 475.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 466.8
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 415.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 360.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 358.1
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 337.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 303.5
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 290.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 286.6
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 284.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 359.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 359.6
FF:10158-103A5 76 years, female 359.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 239.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 239.2
Samples: 4

Max nTPM: 341.3
Min nTPM: 160.4
Sample A Female 232.3
Sample B Female 160.4
Sample C Male 222.6
Sample D Male 341.3
Midbrain
nTPM: 239.8
Samples: 4

Max nTPM: 356.2
Min nTPM: 177.6
Sample A Female 356.2
Sample B Female 235.0
Sample C Male 190.4
Sample D Male 177.6
Periaqueductal gray
nTPM: 182.6
Samples: 3

Max nTPM: 195.7
Min nTPM: 172.9
Sample B Female 195.7
Sample C Male 172.9
Sample D Male 179.2
Superior colliculi
nTPM: 205.7
Samples: 4

Max nTPM: 245.0
Min nTPM: 128.0
Sample A Female 207.0
Sample B Female 128.0
Sample C Male 242.6
Sample D Male 245.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 180.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 180.2
Samples: 4

Max nTPM: 189.5
Min nTPM: 169.8
Sample A Male 189.5
Sample B Male 169.8
Sample C Female 181.3
Sample D Female 180.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 16.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 16.4
69529292 Antisense, RP_050421_03_H11, Mouse strain C57BL/6J (56 days, male) 16.4

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