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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
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Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:196.8 nTPM
GTEx:196.8 nTPM
FANTOM5:207.4 Scaled Tags Per Million
Pig:378.1 nTPM
Mouse:488.8 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

196.8
GTEx sample id Sample description nTPM
Retina
Average nTPM: 196.8
Samples: 105

Max nTPM: 347.4
Min nTPM: 86.0
Std nTPM: 44.2
Median nTPM:
229_1 69 years, female 347.4
172_1 72 years, female 302.8
43_1 64 years, female 280.8
353_1 82 years, female 272.2
447_1 81 years, male 268.4
316_1 62 years, male 265.1
324_1 76 years, male 255.5
217_1 76 years, male 253.0
318_1 68 years, male 252.3
266_1 85 years, male 252.1
177_1 74 years, male 251.2
415_1 77 years, female 246.3
386_1 76 years, male 245.2
292_1 71 years, male 243.6
243_1 75 years, male 242.9
286_1 68 years, female 241.6
405_1 91 years, male 241.5
163_1 78 years, male 240.1
350_1 84 years, female 239.8
153_1 70 years, female 236.1
81_1 67 years, male 235.2
319_1 81 years, male 235.1
468_1 89 years, male 233.8
518_1 75 years, female 230.7
321_1 62 years, female 229.3
335_1 73 years, female 229.3
352_1 62 years, male 227.5
311_1 78 years, male 223.4
377_1 82 years, female 222.7
6_1 73 years, female 222.5
356_1 87 years, female 221.5
404_1 82 years, female 220.5
354_1 81 years, female 217.7
32_1 67 years, male 217.6
348_1 84 years, male 214.6
376_1 75 years, female 212.4
355_1 70 years, female 212.3
149_1 88 years, male 212.1
349_1 83 years, male 211.4
320_1 89 years, female 211.3
291_1 76 years, male 208.1
466_1 57 years, female 207.3
237_1 82 years, male 205.5
218_1 71 years, female 204.3
162_1 79 years, female 202.2
115_1 83 years, male 201.7
379_1 60 years, male 201.5
293_1 68 years, female 200.8
503_1 68 years, male 200.2
506_1 65 years, male 198.9
145_1 84 years, male 197.9
499_1 55 years, female 197.6
126_1 63 years, male 196.2
526_1 61 years, male 196.2
251_1 78 years, male 195.8
425_1 59 years, female 195.1
142_1 61 years, female 194.8
414_1 84 years, female 194.8
322_1 76 years, male 194.4
375_1 74 years, female 192.0
9_1 66 years, female 191.7
347_1 72 years, male 191.7
517_1 88 years, male 191.5
406_1 79 years, male 188.7
18_1 88 years, male 186.1
246_1 77 years, male 185.6
139_1 64 years, female 185.1
351_1 91 years, male 185.1
480_1 63 years, male 184.0
396_1 62 years, male 180.5
413_1 59 years, female 180.1
501_1 88 years, male 176.9
452_1 88 years, female 173.9
265_1 87 years, male 173.6
288_1 66 years, female 173.2
389_1 86 years, female 170.7
254_1 77 years, female 169.9
35_1 74 years, female 168.5
17_1 71 years, male 167.4
189_1 76 years, male 164.5
120_1 70 years, female 160.5
314_1 67 years, male 159.9
264_1 73 years, female 159.1
99_1 64 years, male 156.8
137_1 83 years, male 155.9
173_1 67 years, male 154.4
317_1 60 years, male 153.6
295_1 61 years, female 152.7
117_1 61 years, male 150.4
490_1 67 years, female 148.6
119_1 70 years, female 148.3
313_1 79 years, female 147.9
495_1 57 years, female 146.5
109_1 81 years, female 145.2
315_1 62 years, female 142.8
394_1 75 years, female 136.5
384_1 83 years, male 135.7
89_1 63 years, male 133.9
2_1 77 years, female 129.8
491_1 89 years, female 125.6
307_1 66 years, female 114.6
41_1 94 years, female 112.5
4_1 88 years, female 107.5
42_1 85 years, male 106.7
308_1 70 years, female 86.0
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

207.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 207.4
FF:10030-101E3 24-65 years, mixed 207.4

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

378.1
Pig sample Sample description nTPM
Retina
nTPM: 378.1
Samples: 4

Max nTPM: 429.8
Min nTPM: 347.7
Sample A Female 366.4
Sample B Female 368.6
Sample C Male 429.8
Sample D Male 347.7

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

488.8
Mouse sample Sample description nTPM
Retina
nTPM: 488.8
Samples: 4

Max nTPM: 540.4
Min nTPM: 433.5
Sample A Male 540.4
Sample B Male 499.1
Sample C Female 433.5
Sample D Female 482.1

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