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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1509.8 nTPM
HPA Brain:598.9 nTPM
GTEx:1509.8 nTPM
FANTOM5:150.2 Scaled Tags Per Million
Pig:51.9 nTPM
Mouse:676.9 nTPM
Allen mouse:10.1 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

598.9
Sample id Sample description nTPM
Amygdala
nTPM: 579.2
2695 Female, age 67, right hemisphere 808.2
2514 Male, age 75, right hemisphere 542.6
2814 Male, age 76, right hemisphere 531.4
2517 Female, age 94, left hemisphere 516.8
1987 Female, age 91, left hemisphere 496.9
Basal amygdala
nTPM: 513.2
2827 Female, age 67, right hemisphere 809.6
2609 Male, age 75, right hemisphere 542.6
2685 Female, age 94, left hemisphere 494.8
2110 Male, age 80, left hemisphere 484.4
1955 Male, age 76, both hemispheres 391.6
2243 Female, age 91, right hemisphere 356.5
Central amygdala
nTPM: 567.8
2826 Female, age 94, left hemisphere 1013.9
2515 Male, age 75, right hemisphere 535.0
2701 Female, age 91, right hemisphere 438.8
2239 Male, age 80, left hemisphere 427.1
1905 Male, age 76, both hemispheres 424.3
Corticomedial amygdala
nTPM: 435.7
2535 Female, age 67, right hemisphere 510.4
2428 Male, age 75, right hemisphere 505.3
2829 Male, age 80, left hemisphere 450.4
2429 Female, age 94, left hemisphere 398.7
2240 Male, age 76, both hemispheres 387.7
2242 Female, age 91, right hemisphere 361.9
Lateral amygdala
nTPM: 598.9
2830 Female, age 67, right hemisphere 1022.4
2516 Male, age 75, right hemisphere 674.0
2534 Female, age 94, left hemisphere 581.1
2256 Male, age 80, left hemisphere 512.3
1883 Male, age 76, both hemispheres 423.6
2255 Female, age 91, right hemisphere 379.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1509.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1509.8
Samples: 152

Max nTPM: 4532.7
Min nTPM: 656.1
Std nTPM: 617.0
Median nTPM: 1347.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 4532.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 3904.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 3326.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 3251.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 3228.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 2790.6
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 2783.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 2725.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 2639.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 2594.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 2500.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 2471.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 2421.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 2392.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 2280.9
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 2254.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 2234.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 2223.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 2216.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 2147.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 2127.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 2108.7
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 2071.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 2023.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 2010.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 1984.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1973.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 1966.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1924.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1857.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1828.0
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 1826.7
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 1822.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1811.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1802.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 1747.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 1731.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1724.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 1717.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 1714.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 1700.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 1684.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1683.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1680.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 1657.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 1656.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 1649.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 1639.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1628.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 1615.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 1612.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 1596.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 1587.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 1587.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 1573.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 1573.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 1534.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 1532.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1518.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1496.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1487.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 1473.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1455.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 1454.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1444.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1429.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 1422.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 1409.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 1406.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 1393.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 1381.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 1376.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 1368.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 1362.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1355.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1347.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 1347.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 1333.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 1319.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1319.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 1298.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 1293.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 1270.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1264.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 1263.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1258.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 1255.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1250.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 1246.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 1239.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1236.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 1234.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 1230.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1226.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 1223.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 1221.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 1220.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 1220.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1215.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 1213.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 1211.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 1210.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1206.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1173.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 1163.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 1157.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1155.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 1150.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 1141.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 1140.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 1127.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 1098.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 1097.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 1091.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 1087.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 1080.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 1076.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 1068.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 1066.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 1060.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 1057.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 1050.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 1036.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 1035.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 1019.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 1019.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 997.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 993.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 990.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 966.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 964.8
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 960.2
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 959.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 957.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 952.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 948.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 939.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 924.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 907.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 904.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 890.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 886.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 879.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 856.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 854.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 848.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 845.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 799.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 741.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 729.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 674.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 656.1
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

150.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 150.2
FF:10151-102I7 76 years, female 150.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

51.9
Pig sample Sample description nTPM
Amygdala
nTPM: 51.9
Samples: 4

Max nTPM: 61.0
Min nTPM: 37.5
Sample A Female 58.5
Sample B Female 61.0
Sample C Male 50.5
Sample D Male 37.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

676.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 676.9
Samples: 4

Max nTPM: 692.9
Min nTPM: 659.9
Sample A Male 672.4
Sample B Male 682.3
Sample C Female 692.9
Sample D Female 659.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

10.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 10.1
69873301 Antisense, RP_050512_01_A01, Mouse strain C57BL/6J (56 days, male) 10.1

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