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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:951.7 nTPM
FANTOM5:128.6 Scaled Tags Per Million
Pig:49.2 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA031153Antibody CAB004027
Glial cells MediumLow
Neuronal cells HighHigh





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

951.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 951.7
Samples: 246

Max nTPM: 2391.4
Min nTPM: 401.0
Std nTPM: 289.2
Median nTPM: 885.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 2391.4
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 2144.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 2073.5
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 1844.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 1799.4
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 1777.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 1668.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 1668.6
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 1642.5
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 1607.6
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 1605.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 1439.7
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 1435.3
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 1413.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 1405.1
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 1387.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 1360.5
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 1359.1
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 1354.0
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 1342.0
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 1340.3
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 1322.7
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 1321.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 1306.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 1292.7
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 1283.4
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 1281.1
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 1268.5
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 1263.8
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 1260.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 1245.1
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 1242.6
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 1236.8
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 1235.9
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 1226.2
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 1215.3
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 1212.7
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 1203.7
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 1198.6
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 1177.2
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 1167.9
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 1167.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 1166.7
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 1166.2
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 1155.1
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 1154.7
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 1149.3
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 1144.7
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 1142.6
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 1142.4
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 1139.9
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 1130.0
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 1127.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 1125.4
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 1124.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 1122.3
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 1121.4
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 1118.2
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 1112.5
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 1110.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 1108.4
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 1107.4
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 1105.7
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 1102.7
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 1097.1
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 1088.3
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 1086.6
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 1080.2
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 1077.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 1070.7
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 1070.0
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 1066.4
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 1065.7
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 1060.4
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 1048.0
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 1046.8
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 1030.8
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 1030.7
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 1030.5
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 1023.9
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 1021.5
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 1016.4
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 1014.1
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 1009.0
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 1005.5
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 1002.0
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 1001.9
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 997.4
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 994.8
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 994.5
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 993.8
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 985.3
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 980.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 974.0
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 973.0
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 966.3
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 959.5
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 959.4
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 955.1
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 952.5
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 949.9
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 943.3
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 942.1
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 934.7
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 932.1
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 931.2
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 931.1
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 930.5
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 930.1
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 921.4
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 920.9
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 914.1
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 909.0
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 907.5
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 906.8
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 906.5
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 902.9
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 899.8
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 899.5
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 895.6
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 894.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 890.4
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 886.9
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 884.4
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 878.9
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 878.9
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 877.8
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 874.9
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 868.7
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 864.7
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 860.3
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 858.7
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 857.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 853.8
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 852.8
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 850.0
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 849.5
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 848.6
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 844.3
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 843.7
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 843.6
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 843.3
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 842.2
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 840.5
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 837.8
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 837.2
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 836.2
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 835.0
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 834.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 833.4
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 832.6
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 832.3
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 827.6
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 826.1
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 825.7
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 821.2
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 821.2
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 820.9
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 820.8
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 820.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 816.5
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 811.8
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 811.7
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 811.7
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 807.3
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 803.2
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 802.2
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 801.4
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 800.2
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 793.4
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 786.9
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 780.1
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 775.8
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 775.7
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 775.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 772.5
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 771.6
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 771.2
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 766.3
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 766.2
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 765.6
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 764.7
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 760.2
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 754.7
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 753.4
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 753.0
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 749.0
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 747.3
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 743.8
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 743.0
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 741.8
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 741.6
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 739.4
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 738.6
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 735.7
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 722.1
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 721.9
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 718.8
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 716.3
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 715.4
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 713.9
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 710.1
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 707.7
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 704.1
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 703.5
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 703.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 694.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 694.0
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 686.8
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 685.4
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 684.6
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 683.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 683.6
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 681.4
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 679.0
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 677.7
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 677.4
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 676.6
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 674.4
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 667.8
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 667.1
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 662.6
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 660.7
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 656.1
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 646.0
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 642.6
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 636.9
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 623.0
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 615.0
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 613.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 611.5
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 609.3
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 607.6
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 602.6
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 601.0
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 594.3
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 592.1
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 586.1
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 578.5
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 567.6
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 564.6
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 564.3
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 562.6
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 554.5
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 519.3
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 401.0
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

128.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 128.6
FF:10164-103B2 76 years, female 128.6

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

49.2
Pig sample Sample description nTPM
Caudate
nTPM: 49.2
Samples: 4

Max nTPM: 53.9
Min nTPM: 42.9
Sample A Female 53.9
Sample B Female 49.2
Sample C Male 50.7
Sample D Male 42.9

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