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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1875.0 nTPM
HPA:1348.9 nTPM
GTEx:1875.0 nTPM
FANTOM5:363.1 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA031153Antibody CAB004027
Glandular cells HighMedium





SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1348.9
overview
Male, age 65
Small intestine sample 232
nTPM: 1778.3
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 1280.1
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 1132.9
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 1204.4

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1875.0
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 1875.0
Samples: 187

Max nTPM: 4017.0
Min nTPM: 840.0
Std nTPM: 568.7
Median nTPM: 1749.5
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 4017.0
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 3942.5
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 3592.1
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 3523.5
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 3406.1
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 3390.2
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 3387.5
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 3265.8
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 3196.3
GTEX-183FY-1626-SM-793D8 20-29 years, male 3055.0
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 2996.9
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 2957.8
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 2812.4
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 2806.6
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 2772.7
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 2727.0
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 2687.3
GTEX-14PK6-1626-SM-6871I 70-79 years, female 2649.4
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 2572.7
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 2564.3
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 2507.4
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 2499.1
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 2489.4
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 2488.7
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 2482.8
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 2457.7
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 2448.1
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 2401.1
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 2368.0
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 2366.8
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 2325.4
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 2319.1
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 2316.0
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 2288.2
GTEX-14PKU-1626-SM-6871C 40-49 years, female 2280.7
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 2233.2
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 2218.4
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 2193.6
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 2183.9
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 2176.6
GTEX-1192X-2526-SM-59868 50-59 years, male 2173.4
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 2173.3
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 2151.1
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 2145.4
GTEX-13O61-1326-SM-5KM31 60-69 years, male 2144.0
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 2135.4
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 2121.5
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 2099.0
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 2090.7
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 2089.5
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 2079.2
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 2066.4
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 2051.9
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 2041.9
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 2040.0
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 2032.5
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 2029.0
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 2019.8
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 2013.9
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 1988.1
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 1987.1
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 1985.6
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 1985.2
GTEX-1C475-1426-SM-793CH 40-49 years, female 1976.4
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 1972.0
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 1958.2
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 1955.1
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 1952.5
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 1928.7
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 1927.8
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 1917.0
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 1914.9
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 1914.6
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 1893.6
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 1889.9
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 1885.8
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 1883.5
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 1879.7
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 1875.6
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 1874.1
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 1866.0
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 1865.0
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 1861.1
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 1849.2
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 1846.6
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 1839.1
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 1836.9
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 1820.9
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 1819.6
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 1794.8
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 1791.9
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 1778.5
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 1778.1
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 1749.5
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 1744.6
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 1743.6
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 1741.5
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 1739.9
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 1732.3
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 1729.3
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 1723.6
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 1723.3
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 1712.8
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 1686.3
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 1684.5
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 1669.2
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 1663.1
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 1660.6
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 1654.3
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 1652.3
GTEX-13113-1226-SM-5EGHT 60-69 years, female 1652.1
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 1647.8
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 1646.1
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 1644.7
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 1643.3
GTEX-117YX-0326-SM-5GICL 50-59 years, male 1631.5
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 1629.9
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 1617.2
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 1615.3
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 1609.1
GTEX-13111-1426-SM-5DUW3 50-59 years, male 1608.9
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 1608.8
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 1601.9
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 1595.6
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 1593.0
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 1590.6
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 1581.5
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 1559.5
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 1551.8
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 1550.6
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 1548.7
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 1544.5
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 1533.8
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 1515.4
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 1512.0
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 1505.2
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 1505.0
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 1502.3
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 1495.8
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 1495.2
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 1493.5
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 1489.2
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 1473.6
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 1463.7
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 1452.3
GTEX-144GM-1026-SM-79OKU 20-29 years, male 1450.0
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 1440.5
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 1439.8
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 1439.4
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 1437.9
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 1431.5
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 1431.2
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 1428.7
GTEX-14PN3-2026-SM-68729 60-69 years, female 1422.5
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 1421.8
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 1409.1
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 1399.5
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 1384.8
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 1379.5
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 1359.9
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 1345.8
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 1340.0
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 1317.5
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 1314.1
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 1311.3
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 1308.8
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 1295.9
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 1285.0
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 1284.0
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 1282.1
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 1277.2
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 1272.2
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 1270.0
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 1245.3
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 1231.5
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 1217.7
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 1212.4
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 1206.1
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 1172.8
GTEX-YFCO-1326-SM-664NV 40-49 years, male 1135.7
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 1118.6
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 1109.4
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 1006.9
GTEX-1122O-1326-SM-5H11F 60-69 years, female 988.3
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 946.5
GTEX-111YS-1426-SM-5GID8 60-69 years, male 935.9
GTEX-ZTSS-0926-SM-59865 40-49 years, male 840.0
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

363.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 363.1
FF:10024-101D6 15,40,85 years, mixed 363.1

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