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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:2458.8 nTPM
GTEx:2458.8 nTPM
FANTOM5:539.0 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA031153Antibody CAB004027
Squamous epithelial cells HighMedium




VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2458.8
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 2458.8
Samples: 156

Max nTPM: 5458.5
Min nTPM: 1191.3
Std nTPM: 627.3
Median nTPM: 2317.9
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 5458.5
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 4693.4
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 4056.4
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 4032.7
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 3901.1
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 3820.0
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 3758.2
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 3534.3
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 3532.3
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 3496.1
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 3466.2
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 3303.0
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 3295.9
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 3278.2
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 3261.1
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 3257.0
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 3225.3
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 3192.6
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 3173.0
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 3149.6
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 3114.5
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 3081.6
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 3078.7
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 3070.2
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 3022.2
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 2991.8
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 2964.6
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 2961.7
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 2939.9
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 2936.9
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 2933.7
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 2853.3
GTEX-16NPV-2526-SM-6M483 50-59 years, female 2844.4
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 2834.2
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 2826.0
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 2801.4
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 2783.3
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 2779.2
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 2778.3
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 2766.8
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 2765.6
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 2754.8
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 2750.7
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 2742.8
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 2739.7
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 2723.1
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 2720.7
GTEX-11I78-2026-SM-5987C 50-59 years, female 2699.5
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 2678.4
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 2663.6
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 2662.1
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 2630.1
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 2622.7
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 2613.6
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 2598.8
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 2592.4
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 2557.3
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 2541.4
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 2540.9
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 2538.8
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 2501.2
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 2493.7
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 2455.8
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 2454.8
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 2448.1
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 2442.4
GTEX-14PKU-1326-SM-6871B 40-49 years, female 2434.9
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 2423.2
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 2413.2
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 2408.3
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 2401.7
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 2392.6
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 2390.8
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 2378.1
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 2375.8
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 2359.3
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 2323.3
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 2318.5
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 2317.3
GTEX-S341-1226-SM-4AD5S 40-49 years, female 2314.4
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 2313.0
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 2302.1
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 2287.4
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 2275.6
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 2268.3
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 2267.0
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 2266.6
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 2265.7
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 2257.6
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 2253.3
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 2237.2
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 2237.1
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 2235.5
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 2235.2
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 2231.1
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 2221.0
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 2220.2
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 2197.0
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 2186.0
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 2168.8
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 2164.4
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 2158.4
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 2151.9
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 2143.0
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 2137.9
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 2137.7
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 2137.1
GTEX-QCQG-1226-SM-48U23 50-59 years, female 2128.9
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 2126.3
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 2120.3
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 2119.5
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 2117.3
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 2111.2
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 2100.7
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 2098.8
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 2097.2
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 2088.3
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 2063.6
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 2044.7
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 2040.8
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 2034.5
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 2025.9
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 2008.2
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 2000.6
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 1975.7
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 1970.6
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 1970.4
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 1951.7
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 1932.1
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 1921.1
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 1909.6
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 1886.0
GTEX-1C475-0526-SM-793AC 40-49 years, female 1868.8
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 1852.7
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 1806.8
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 1793.0
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 1792.1
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 1783.5
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 1780.3
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 1774.4
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 1766.0
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 1764.3
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 1762.3
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 1747.5
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 1731.3
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 1715.6
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 1714.2
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 1704.9
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 1627.4
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 1624.9
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 1593.5
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 1567.2
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 1543.5
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 1444.3
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 1390.6
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 1191.3
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

539.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 539.0
FF:10204-103F6 68 years, female 539.0

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