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TISSUE PRIMARY DATA HIPPOCAMPUS Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Hippocampus
Tissue proteome
HIPPOCAMPUS - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:439.8 nTPM
GTEx:1214.3 nTPM
FANTOM5:172.9 Scaled Tags Per Million

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA031153Antibody CAB004027
Glial cells LowNot detected
Neuronal cells MediumHigh





HIPPOCAMPUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

439.8
Sample id Sample description nTPM
Hippocampus
nTPM: 439.8
2621 Female, age 67, right hemisphere 534.1
1898 Male, age 80, left hemisphere 469.0
2529 Female, age 94, left hemisphere 463.3
1911 Female, age 85, right hemisphere 414.0
1855 Male, age 76, left hemisphere 410.9
2148 Female, age 91, left hemisphere 347.4

HIPPOCAMPUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1214.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 1214.3
Samples: 197

Max nTPM: 3229.1
Min nTPM: 471.6
Std nTPM: 488.9
Median nTPM: 1061.4
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 3229.1
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 3117.9
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 2818.8
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 2814.9
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 2655.9
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 2458.6
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 2434.8
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 2425.1
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 2422.9
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 2124.8
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 2082.6
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 2044.2
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 2039.2
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 1936.1
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 1894.9
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 1889.0
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 1839.0
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 1838.9
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 1830.5
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 1794.8
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 1784.0
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 1762.7
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 1762.7
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 1759.8
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 1757.3
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 1742.5
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 1734.2
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 1725.9
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 1711.4
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 1701.8
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 1696.7
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 1680.9
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 1680.3
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 1675.4
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 1636.4
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 1633.4
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 1598.6
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 1582.3
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 1580.5
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 1577.7
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 1570.1
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 1565.6
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 1564.8
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 1564.0
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 1560.3
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 1558.1
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 1550.5
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 1545.1
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 1535.2
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 1505.3
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 1454.9
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 1443.8
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 1411.7
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 1380.6
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 1380.0
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 1369.5
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 1361.0
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 1344.4
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 1339.2
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 1313.0
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 1307.7
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 1299.8
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 1298.5
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 1292.8
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 1287.9
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 1271.8
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 1261.0
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 1248.9
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 1247.2
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 1241.5
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 1240.8
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 1235.4
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 1202.9
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 1201.1
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 1199.7
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 1193.8
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 1192.1
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 1192.1
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 1188.5
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 1184.9
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 1183.3
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 1170.8
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 1170.0
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 1153.5
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 1152.5
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 1142.1
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 1135.2
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 1125.6
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 1124.1
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 1123.0
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 1119.6
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 1098.6
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 1088.9
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 1086.2
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 1084.1
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 1073.2
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 1070.0
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 1062.6
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 1061.4
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 1055.0
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 1054.5
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 1042.2
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 1040.8
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 1040.3
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 1032.8
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 1029.6
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 1028.3
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 1027.4
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 1023.3
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 1017.9
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 1015.8
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 1015.3
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 1013.5
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 1012.1
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 1011.9
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 1009.4
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 1008.6
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 1002.2
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 998.6
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 997.9
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 997.6
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 997.5
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 997.2
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 996.9
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 988.4
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 985.4
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 973.7
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 971.9
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 971.0
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 967.9
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 963.4
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 958.0
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 957.9
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 949.5
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 942.1
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 932.0
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 931.7
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 924.2
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 919.4
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 913.8
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 913.1
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 910.1
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 905.1
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 904.6
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 898.2
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 892.4
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 878.3
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 877.8
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 865.2
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 864.5
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 859.3
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 857.7
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 853.4
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 849.0
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 842.2
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 839.8
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 833.5
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 826.0
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 819.5
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 819.4
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 818.6
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 810.4
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 808.6
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 808.6
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 806.4
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 799.0
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 789.6
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 780.3
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 774.2
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 770.3
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 758.1
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 751.5
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 749.2
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 740.6
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 737.2
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 736.4
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 735.1
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 733.3
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 733.0
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 731.4
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 731.0
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 729.3
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 726.3
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 713.2
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 702.8
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 689.9
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 680.5
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 679.9
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 676.3
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 667.5
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 663.0
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 642.5
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 603.5
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 561.5
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 552.8
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 529.9
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 471.6
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HIPPOCAMPUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

172.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 172.9
FF:10169-103B7 60 years, female 197.3
FF:10153-102I9 76 years, female 148.5

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