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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:183.1 nTPM
HPA Brain:1.4 nTPM
GTEx:183.1 nTPM
FANTOM5:80.3 Scaled Tags Per Million
Pig:138.3 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 1.4
2048 Male, age 55, midline 4.6
2565 Male, age 75, midline 1.0
2816 Male, age 47, midline 0.7
2194 Female, age 79, both hemispheres 0.3
1981 Female, age 72, midline 0.2
Cervical spinal cord, dorsal horn
nTPM: 0.6
2297 Male, age 75, both hemispheres 1.0
2069 Male, age 47, both hemispheres 0.9
2296 Male, age 66, both hemispheres 0.9
2721 Male, age 90, both hemispheres 0.5
2173 Female, age 72, unknown 0.2
1877 Male, age 55, unknown 0.0
Cervical spinal cord, ventral horn
nTPM: 0.5
2098 Female, age 72, unknown 0.8
2480 Male, age 75, both hemispheres 0.8
2809 Male, age 90, both hemispheres 0.8
2820 Female, age 79, both hemispheres 0.6
2295 Male, age 66, both hemispheres 0.3
2068 Male, age 55, unknown 0.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

183.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 183.1
Samples: 159

Max nTPM: 379.2
Min nTPM: 99.2
Std nTPM: 41.0
Median nTPM: 179.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 379.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 298.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 291.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 289.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 285.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 265.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 262.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 261.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 261.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 256.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 248.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 247.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 235.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 234.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 233.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 229.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 228.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 224.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 224.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 224.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 222.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 221.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 221.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 219.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 217.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 216.2
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 214.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 212.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 211.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 211.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 210.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 210.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 209.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 208.3
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 208.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 207.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 207.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 206.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 205.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 205.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 204.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 204.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 202.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 199.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 199.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 199.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 199.2
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 198.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 197.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 196.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 196.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 195.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 193.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 193.3
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 191.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 191.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 190.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 189.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 189.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 189.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 187.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 187.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 187.8
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 187.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 187.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 186.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 186.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 185.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 184.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 184.4
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 184.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 183.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 182.2
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 181.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 180.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 180.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 180.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 180.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 180.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 179.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 179.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 179.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 178.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 178.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 178.4
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 177.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 176.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 176.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 175.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 174.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 174.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 173.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 173.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 173.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 173.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 172.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 171.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 171.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 171.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 169.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 169.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 169.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 168.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 167.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 166.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 166.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 165.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 165.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 165.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 164.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 164.2
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 163.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 163.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 162.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 160.5
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 158.9
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 157.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 157.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 156.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 155.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 155.0
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 154.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 154.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 152.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 152.3
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 151.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 150.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 150.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 149.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 149.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 148.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 147.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 146.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 146.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 146.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 143.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 141.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 141.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 141.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 140.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 137.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 137.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 136.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 136.1
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 133.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 132.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 131.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 130.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 128.2
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 126.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 125.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 120.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 119.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 118.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 114.2
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 114.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 113.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 99.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 99.2
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

80.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 80.3
FF:10181-103D1 60 years, female 102.3
FF:10159-103A6 76 years, female 58.3

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

138.3
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 117.2
Samples: 4

Max nTPM: 140.1
Min nTPM: 101.0
Sample A Female 101.0
Sample B Female 108.8
Sample C Male 140.1
Sample D Male 119.0
Ventral spinal cord
nTPM: 138.3
Samples: 4

Max nTPM: 153.3
Min nTPM: 124.6
Sample A Female 124.6
Sample B Female 147.3
Sample C Male 153.3
Sample D Male 127.9

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