We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
MTCH1
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • MTCH1
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:224.6 nTPM
HPA Brain:246.9 nTPM
GTEx:224.6 nTPM
FANTOM5:107.9 Scaled Tags Per Million
Pig:174.2 nTPM
Mouse:476.3 nTPM
Allen mouse:26.3 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

246.9
Sample id Sample description nTPM
Amygdala
nTPM: 215.4
1987 Female, age 91, left hemisphere 231.3
2814 Male, age 76, right hemisphere 222.2
2695 Female, age 67, right hemisphere 220.5
2517 Female, age 94, left hemisphere 208.6
2514 Male, age 75, right hemisphere 194.1
Basal amygdala
nTPM: 201.4
2609 Male, age 75, right hemisphere 227.7
2110 Male, age 80, left hemisphere 221.9
2243 Female, age 91, right hemisphere 207.7
1955 Male, age 76, both hemispheres 203.0
2685 Female, age 94, left hemisphere 201.9
2827 Female, age 67, right hemisphere 146.1
Central amygdala
nTPM: 246.9
2826 Female, age 94, left hemisphere 323.7
2515 Male, age 75, right hemisphere 259.4
2239 Male, age 80, left hemisphere 231.8
1905 Male, age 76, both hemispheres 216.9
2701 Female, age 91, right hemisphere 202.5
Corticomedial amygdala
nTPM: 197.1
2829 Male, age 80, left hemisphere 283.9
2428 Male, age 75, right hemisphere 233.4
2242 Female, age 91, right hemisphere 186.1
2429 Female, age 94, left hemisphere 177.6
2240 Male, age 76, both hemispheres 163.4
2535 Female, age 67, right hemisphere 138.4
Lateral amygdala
nTPM: 221.7
2534 Female, age 94, left hemisphere 306.9
1883 Male, age 76, both hemispheres 248.7
2516 Male, age 75, right hemisphere 222.7
2255 Female, age 91, right hemisphere 195.4
2256 Male, age 80, left hemisphere 194.1
2830 Female, age 67, right hemisphere 162.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

224.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 224.6
Samples: 152

Max nTPM: 443.9
Min nTPM: 124.2
Std nTPM: 59.6
Median nTPM: 217.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 443.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 422.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 415.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 357.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 342.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 340.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 333.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 329.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 316.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 315.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 315.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 313.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 310.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 308.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 307.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 302.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 301.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 300.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 300.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 298.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 297.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 294.2
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 284.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 282.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 281.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 280.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 280.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 279.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 279.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 278.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 273.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 269.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 269.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 267.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 266.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 265.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 264.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 264.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 257.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 256.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 256.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 255.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 253.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 252.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 249.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 246.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 245.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 245.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 244.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 243.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 241.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 241.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 239.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 238.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 238.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 232.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 230.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 229.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 229.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 228.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 227.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 227.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 226.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 224.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 224.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 224.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 223.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 223.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 223.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 222.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 222.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 221.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 221.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 218.5
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 218.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 217.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 217.8
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 216.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 216.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 215.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 214.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 214.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 210.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 210.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 210.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 207.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 206.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 206.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 203.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 203.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 202.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 202.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 200.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 200.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 199.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 197.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 196.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 196.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 194.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 194.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 193.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 191.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 189.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 189.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 189.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 188.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 187.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 186.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 186.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 185.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 185.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 184.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 182.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 182.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 181.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 180.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 178.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 177.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 175.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 172.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 170.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 168.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 167.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 166.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 166.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 164.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 164.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 164.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 164.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 163.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 163.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 161.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 158.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 157.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 156.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 155.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 155.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 155.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 154.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 153.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 150.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 150.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 149.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 148.1
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 144.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 144.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 141.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 140.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 137.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 137.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 132.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 124.2
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

107.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 107.9
FF:10151-102I7 76 years, female 107.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

174.2
Pig sample Sample description nTPM
Amygdala
nTPM: 174.2
Samples: 4

Max nTPM: 261.0
Min nTPM: 135.2
Sample A Female 261.0
Sample B Female 135.2
Sample C Male 147.4
Sample D Male 153.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

476.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 476.3
Samples: 4

Max nTPM: 500.1
Min nTPM: 456.7
Sample A Male 500.1
Sample B Male 490.5
Sample C Female 456.7
Sample D Female 457.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

26.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 26.3
67764936 Antisense, RP_040916_02_F04, Mouse strain C57BL/6J (56 days, male) 26.3

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org