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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
413.5
nTPM
FANTOM5:
318.1
Scaled Tags Per Million
Pig:
2.3
nTPM
Allen mouse:
3.0
Expression energy
PONS - Annotated protein expression
Pending normal tissue analysis
PONS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
413.5
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 413.5
2301
Female, age 85, both hemispheres
485.2
2090
Male, age 80, both hemispheres
453.0
2188
Female, age 91, both hemispheres
408.5
1984
Male, age 76, both hemispheres
307.4
Dorsal cochlear nucleus nTPM: 394.2
2187
Female, age 91, both hemispheres
460.3
2370
Male, age 61, both hemispheres
425.4
2378
Male, age 80, both hemispheres
422.2
2058
Male, age 76, both hemispheres
343.6
2802
Male, age 74, right hemisphere
319.8
Dorsal tegmental nucleus nTPM: 406.1
2358
Male, age 61, both hemispheres
479.0
2083
Male, age 80, both hemispheres
419.6
2326
Male, age 74, both hemispheres
409.4
1936
Male, age 76, left hemisphere
316.3
Dorsolateral tegmental area nTPM: 392.0
2337
Male, age 61, both hemispheres
473.0
2654
Male, age 80, both hemispheres
429.1
2751
Female, age 85, both hemispheres
368.5
2360
Male, age 74, both hemispheres
357.4
2141
Male, age 76, both hemispheres
331.7
Kolliker-Fuse nucleus nTPM: 381.8
2315
Male, age 76, right hemisphere
404.2
2163
Male, age 80, both hemispheres
373.2
2793
Female, age 91, left hemisphere
368.1
Lateral lemniscal nuclei nTPM: 325.3
2169
Male, age 76, both hemispheres
366.2
2746
Female, age 85, left hemisphere
337.7
2453
Male, age 74, right hemisphere
317.1
2036
Male, age 80, both hemispheres
303.8
2320
Female, age 91, left hemisphere
301.5
Lateral parabrachial nucleus nTPM: 358.4
2792
Male, age 76, both hemispheres
385.0
2139
Female, age 85, right hemisphere
376.1
2013
Male, age 80, both hemispheres
362.8
2790
Male, age 61, both hemispheres
309.6
Lateral vestibular nucleus nTPM: 402.1
2311
Male, age 80, both hemispheres
451.6
2184
Male, age 76, both hemispheres
352.7
Locus coeruleus nTPM: 342.1
2162
Male, age 80, both hemispheres
404.3
2123
Female, age 91, both hemispheres
384.1
1980
Male, age 76, both hemispheres
363.4
2317
Female, age 72, unknown
332.8
2014
Male, age 55, unknown
324.4
2720
Male, age 74, both hemispheres
298.6
2788
Male, age 74, unknown
287.2
Medial parabrachial nucleus nTPM: 375.9
2170
Female, age 91, both hemispheres
508.0
2156
Male, age 61, both hemispheres
393.6
2786
Male, age 76, both hemispheres
349.5
2854
Male, age 80, both hemispheres
331.1
2463
Female, age 85, right hemisphere
297.5
Medial periolivary nuclei nTPM: 350.0
2063
Male, age 76, both hemispheres
409.0
2081
Male, age 80, both hemispheres
401.8
2458
Female, age 91, both hemispheres
375.1
2171
Female, age 85, both hemispheres
308.2
2791
Male, age 74, right hemisphere
255.9
Motor facial nucleus nTPM: 320.4
2126
Male, age 61, both hemispheres
367.0
2062
Male, age 76, both hemispheres
352.3
2365
Male, age 74, right hemisphere
316.6
2795
Female, age 91, both hemispheres
315.4
2697
Female, age 85, both hemispheres
286.9
2327
Male, age 80, both hemispheres
283.9
Motor trigeminal nucleus nTPM: 365.7
2335
Male, age 61, both hemispheres
410.9
2309
Male, age 76, both hemispheres
374.4
2321
Female, age 91, both hemispheres
362.4
2560
Male, age 74, both hemispheres
347.6
2079
Male, age 80, both hemispheres
333.2
Nuclei of the trapezoid body nTPM: 354.0
1983
Male, age 76, both hemispheres
438.3
2166
Male, age 80, both hemispheres
354.0
2368
Female, age 91, both hemispheres
351.9
2159
Male, age 61, both hemispheres
328.2
2735
Female, age 85, both hemispheres
297.6
Nucleus raphe magnus nTPM: 318.0
2459
Female, age 91, both hemispheres
358.9
2455
Male, age 74, both hemispheres
327.7
2051
Male, age 76, both hemispheres
316.5
2328
Male, age 80, both hemispheres
314.7
2172
Female, age 85, both hemispheres
306.8
2160
Male, age 61, both hemispheres
283.3
Paramedian reticular nucleus nTPM: 332.7
2057
Male, age 80, both hemispheres
404.1
2313
Male, age 61, both hemispheres
344.7
2052
Male, age 76, both hemispheres
317.2
2050
Female, age 85, both hemispheres
264.8
Pedunculopontine tegmental nucleus nTPM: 363.5
2338
Male, age 61, both hemispheres
419.2
2334
Male, age 80, both hemispheres
400.4
1921
Female, age 85, both hemispheres
270.8
Pontine nuclei nTPM: 346.0
2115
Male, age 80, left hemisphere
404.4
2319
Female, age 91, both hemispheres
386.2
1968
Male, age 76, left hemisphere
380.4
1863
Male, age 55, unknown
337.4
2454
Male, age 74, left hemisphere
331.2
2109
Female, age 72, unknown
325.5
2787
Female, age 85, both hemispheres
324.3
2727
Male, age 61, right hemisphere
278.1
Pontine raphe nucleus nTPM: 299.1
2122
Female, age 85, midline
320.8
2853
Male, age 76, midline
277.3
Posteroventral cochlear nucleus nTPM: 408.6
2135
Female, age 91, both hemispheres
471.0
2371
Male, age 61, both hemispheres
440.8
2341
Male, age 80, both hemispheres
415.9
2070
Male, age 76, both hemispheres
368.9
2752
Female, age 85, both hemispheres
346.3
Principal sensory trigeminal nucleus nTPM: 330.6
2367
Female, age 91, left hemisphere
371.4
2158
Male, age 61, both hemispheres
361.5
2324
Male, age 76, both hemispheres
350.4
2008
Male, age 80, left hemisphere
239.3
Reticular pontine nucleus, caudal nTPM: 407.0
2457
Female, age 91, both hemispheres
501.9
2559
Male, age 74, both hemispheres
418.1
2092
Male, age 76, both hemispheres
406.1
2332
Male, age 80, right hemisphere
301.8
Reticular pontine nucleus, oral nTPM: 345.3
2366
Female, age 91, both hemispheres
406.4
2361
Male, age 74, both hemispheres
401.0
2167
Male, age 76, both hemispheres
347.3
1939
Male, age 80, both hemispheres
293.2
2012
Female, age 85, both hemispheres
278.4
Reticulotegmental nucleus nTPM: 377.8
2452
Male, age 74, both hemispheres
454.0
2322
Female, age 91, both hemispheres
378.6
2333
Male, age 80, both hemispheres
367.8
2325
Male, age 76, both hemispheres
310.7
Spinal trigeminal nucleus, oral nTPM: 348.1
2164
Male, age 80, both hemispheres
383.6
1978
Male, age 76, both hemispheres
366.4
2737
Female, age 85, both hemispheres
294.2
Subcoeruleus area nTPM: 361.7
2451
Male, age 74, both hemispheres
499.2
2369
Female, age 85, left hemisphere
355.4
2323
Female, age 91, left hemisphere
333.5
2089
Male, age 76, left hemisphere
330.1
1958
Male, age 80, both hemispheres
290.3
Superior olive nTPM: 314.9
2561
Female, age 91, both hemispheres
370.5
2020
Male, age 76, both hemispheres
355.7
2364
Male, age 74, right hemisphere
318.9
2329
Male, age 80, right hemisphere
300.5
1875
Female, age 85, both hemispheres
229.0
Ventral periolivary nuclei nTPM: 309.8
2165
Male, age 80, both hemispheres
347.3
2023
Male, age 76, both hemispheres
333.9
2794
Female, age 91, left hemisphere
298.5
2130
Female, age 85, both hemispheres
259.5
Ventrolateral tegmental area, A5 NE cell group nTPM: 335.2
2161
Male, age 80, both hemispheres
383.0
2359
Male, age 61, both hemispheres
368.7
2456
Female, age 91, both hemispheres
360.1
2449
Male, age 74, both hemispheres
306.9
2840
Female, age 85, both hemispheres
305.0
1959
Male, age 76, both hemispheres
287.4
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
2.3
Pig sample
Sample description
nTPM
Pons nTPM: 2.3
Samples: 4
Max nTPM: 4.3
Min nTPM: 0.2
Sample A
Female
0.2
Sample B
Female
4.3
Sample C
Male
2.4
Sample D
Male
2.1
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
