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TISSUE SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1646.1 nTPM
HPA:1022.4 nTPM
GTEx:1646.1 nTPM
FANTOM5:506.9 Scaled Tags Per Million

SMALL INTESTINE - Annotated protein expression
Pending normal tissue analysis

SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1022.4
overview
Male, age 65
Small intestine sample 232
nTPM: 1347.5
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 1040.3
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 955.6
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 746.3

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1646.1
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 1646.1
Samples: 187

Max nTPM: 3428.4
Min nTPM: 820.9
Std nTPM: 441.4
Median nTPM: 1598.2
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 3428.4
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 3226.0
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 2958.1
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 2928.5
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 2666.3
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 2654.8
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 2625.4
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 2578.6
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 2573.4
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 2534.0
GTEX-14PK6-1626-SM-6871I 70-79 years, female 2502.8
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 2483.7
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 2439.8
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 2373.3
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 2322.6
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 2318.4
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 2224.2
GTEX-183FY-1626-SM-793D8 20-29 years, male 2223.2
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 2201.2
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 2197.4
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 2164.4
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 2157.7
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 2124.9
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 2119.8
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 2094.6
GTEX-14PKU-1626-SM-6871C 40-49 years, female 2092.7
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 2077.6
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 2061.4
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 2045.7
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 2022.9
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 2020.5
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 2019.1
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 2007.1
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 2006.6
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 1993.0
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 1978.9
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 1947.2
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 1943.5
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 1934.2
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 1933.5
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 1925.6
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 1898.3
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 1897.4
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 1888.4
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 1871.6
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 1869.5
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 1867.5
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 1865.3
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 1860.3
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 1834.0
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 1810.9
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 1806.4
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 1802.6
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 1786.9
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 1783.0
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 1779.5
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 1774.8
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 1771.3
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 1765.2
GTEX-1C475-1426-SM-793CH 40-49 years, female 1756.9
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 1752.3
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 1747.4
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 1742.7
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 1742.6
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 1741.9
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 1738.5
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 1735.7
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 1731.2
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 1724.0
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 1718.7
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 1711.6
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 1711.0
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 1709.7
GTEX-13O61-1326-SM-5KM31 60-69 years, male 1709.1
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 1702.4
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 1700.2
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 1697.0
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 1696.0
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 1690.9
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 1677.7
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 1676.0
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 1674.6
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 1672.5
GTEX-117YX-0326-SM-5GICL 50-59 years, male 1650.5
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 1636.7
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 1632.2
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 1626.2
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 1616.1
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 1614.5
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 1609.0
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 1607.6
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 1605.2
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 1604.1
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 1598.2
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 1575.7
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 1561.2
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 1536.4
GTEX-13113-1226-SM-5EGHT 60-69 years, female 1535.5
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 1531.1
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 1529.1
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 1523.4
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 1521.6
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 1520.0
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 1510.5
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 1503.8
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 1500.1
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 1497.5
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 1496.1
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 1490.7
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 1486.9
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 1485.7
GTEX-1192X-2526-SM-59868 50-59 years, male 1480.0
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 1473.0
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 1471.4
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 1471.3
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 1462.6
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 1462.4
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 1450.2
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 1447.9
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 1447.0
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 1442.1
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 1439.8
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 1434.6
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 1418.5
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 1418.1
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 1416.4
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 1415.3
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 1409.6
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 1400.7
GTEX-13111-1426-SM-5DUW3 50-59 years, male 1397.9
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 1386.3
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 1384.9
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 1383.8
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 1368.1
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 1357.7
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 1357.2
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 1353.8
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 1330.5
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 1324.4
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 1317.2
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 1312.1
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 1291.7
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 1288.4
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 1287.3
GTEX-YFCO-1326-SM-664NV 40-49 years, male 1283.3
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 1282.4
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 1275.2
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 1273.5
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 1257.9
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 1257.1
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 1254.6
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 1250.8
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 1250.3
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 1236.8
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 1228.1
GTEX-111YS-1426-SM-5GID8 60-69 years, male 1227.3
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 1226.9
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 1222.7
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 1218.6
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 1218.5
GTEX-144GM-1026-SM-79OKU 20-29 years, male 1216.5
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 1211.8
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 1211.3
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 1205.3
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 1199.9
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 1190.3
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 1186.0
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 1178.6
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 1169.5
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 1165.1
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 1150.2
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 1147.5
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 1144.4
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 1144.0
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 1109.7
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 1106.3
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 1090.2
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 1089.3
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 1083.4
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 1074.0
GTEX-14PN3-2026-SM-68729 60-69 years, female 1048.7
GTEX-1122O-1326-SM-5H11F 60-69 years, female 1028.4
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 1024.3
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 1022.9
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 973.5
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 924.8
GTEX-ZTSS-0926-SM-59865 40-49 years, male 820.9
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

506.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 506.9
FF:10024-101D6 15,40,85 years, mixed 506.9

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