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RPS24
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  • SUMMARY

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CANCER STOMACH CANCER Show tissue menu
BREAST CANCER CARCINOID CERVICAL CANCER COLORECTAL CANCER ENDOMETRIAL CANCER GLIOMA HEAD AND NECK CANCER LIVER CANCER LUNG CANCER LYMPHOMA
MELANOMA OVARIAN CANCER PANCREATIC CANCER PROSTATE CANCER RENAL CANCER SKIN CANCER STOMACH CANCER TESTIS CANCER THYROID CANCER UROTHELIAL CANCER
STAD TCGA PROTEIN EXPRESSION
ANTIBODIES
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VALIDATION
Dictionary
Stomach cancer
Human cancer
Stomach adenocarcinoma
STOMACH ADENOCARCINOMA (TCGA) - Interactive survival scatter ploti

The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.

The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".

Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.

Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.

& Survival analysisi

Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.

RPS24 is not prognostic in Stomach Adenocarcinoma (TCGA)


Stage:


Survival analysis
Current cut offi

Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.

:
Best expression cut offi

Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .

When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.

: 2212.55
Median expressioni

Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.

: N/A
Median follow up timei

Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.

: N/A
P scorei

Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.

N/A
5-year survival highi

5-year survival for patients with higher expression than the expression cutoff.

For melanoma and glioma, 3-year survival is shown.

N/A
5-year survival lowi

5-year survival for patients with lower expression than the expression cutoff.

For melanoma and glioma, 3-year survival is shown.

N/A
TCGA RNA samplesi

RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.

Average pTPM 2457.6
Number of samples 346
Samples
Sample Description pTPM
TCGA-IN-7808-01A 59 years, male, white, stage:'--, dead, 105 days 13884.5
TCGA-VQ-A91N-01A 59 years, female, stage:Stage IV, dead, 570 days 8803.8
TCGA-D7-A6EX-01A 72 years, female, white, stage:Stage IIIA, alive, 344 days 8211.8
TCGA-BR-8369-01A 76 years, female, white, stage:Stage IIIB, alive, 427 days 7712.5
TCGA-RD-A8MV-01A 56 years, male, white, stage:Stage IIIB, alive, 3720 days 7674.9
TCGA-D7-A74A-01A 61 years, female, white, stage:Stage IIIA, alive, 607 days 7051.6
TCGA-VQ-A91A-01A 67 years, male, white, stage:Stage IIIB, alive, 1200 days 6474.0
TCGA-CD-8530-01A 51 years, male, asian, stage:Stage II, alive, 377 days 6282.6
TCGA-IN-A7NU-01A 69 years, male, white, stage:Stage IIIB, alive, 356 days 5622.9
TCGA-BR-7717-01A 63 years, male, white, stage:Stage IV, dead, 552 days 5498.8
TCGA-CG-4444-01A 76 years, male, stage:Stage IIIA, alive, 1431 days 5246.5
TCGA-BR-8676-01A 59 years, male, white, stage:Stage IIIB, alive, 229 days 4933.4
TCGA-BR-8680-01A 45 years, male, asian, stage:Stage IV, alive, 972 days 4828.6
TCGA-RD-A7BT-01A 66 years, male, native hawaiian or other pacific islander, stage:Stage IV, dead, 262 days 4347.9
TCGA-CD-A487-01A 51 years, male, asian, stage:Stage IIB, alive, 374 days 4323.3
TCGA-IN-7806-01A 50 years, male, white, stage:Stage IIB, alive, 1106 days 4185.9
TCGA-VQ-A91Z-01A 67 years, female, white, stage:Stage IIIA, alive, 1690 days 4183.5
TCGA-CD-8527-01A 72 years, female, asian, stage:Stage II, dead, 218 days 4177.3
TCGA-HU-A4GU-01A 73 years, male, asian, stage:Stage IIB, alive, 200 days 4175.2
TCGA-HU-A4G2-01A 45 years, male, asian, stage:Stage IIB, alive, 739 days 4070.1
TCGA-BR-6707-01A 75 years, male, white, stage:Stage IIA, dead, 605 days 4061.6
TCGA-HU-A4GP-01A 62 years, female, asian, stage:Stage IIA, alive, 273 days 4023.6
TCGA-HU-A4GQ-01A 71 years, male, asian, stage:Stage IIIC, dead, 3 days 4018.4
TCGA-VQ-A925-01A 66 years, male, white, stage:Stage IIIA, dead, 138 days 3999.3
TCGA-HU-A4H5-01A 71 years, male, asian, stage:Stage IB, alive, 724 days 3905.4
TCGA-BR-4279-01A 43 years, male, white, stage:Stage II, dead, 291 days 3893.6
TCGA-BR-A4QL-01A 75 years, female, white, stage:Stage IIIB, dead, 491 days 3829.1
TCGA-BR-8361-01A 71 years, female, white, stage:Stage IIIC, alive, 946 days 3733.9
TCGA-HU-A4GT-01A 71 years, female, asian, stage:Stage IIA, alive, 198 days 3718.4
TCGA-D7-A6EZ-01A 66 years, male, white, stage:Stage IIIA, dead, 618 days 3698.2
TCGA-CG-4437-01A 83 years, male, stage:Stage II, alive, 245 days 3683.2
TCGA-VQ-A8PH-01A 62 years, male, white, stage:Stage IIIB, dead, 389 days 3667.2
TCGA-HU-8602-01A 58 years, female, asian, stage:Stage IIB, alive, 679 days 3648.2
TCGA-BR-4201-01A 66 years, female, white, stage:'--, dead, 940 days 3647.7
TCGA-BR-7715-01A 65 years, male, white, stage:Stage IIA, alive, 1023 days 3642.5
TCGA-BR-8289-01A 57 years, male, white, stage:Stage IV, dead, 81 days 3629.2
TCGA-VQ-A94U-01A 70 years, male, white, stage:Stage IIB, alive, 819 days 3627.3
TCGA-BR-8059-01A 72 years, male, white, stage:Stage III, dead, 439 days 3614.1
TCGA-BR-8487-01A 64 years, female, white, stage:Stage IIA, alive, 34 days 3606.1
TCGA-BR-8077-01A 58 years, female, white, stage:Stage IIIB, alive, 21 days 3581.2
TCGA-VQ-A8P2-01A 68 years, male, white, stage:Stage IIIA, alive, 1160 days 3579.2
TCGA-D7-6525-01A 58 years, male, white, stage:Stage IIIA, dead, 406 days 3571.9
TCGA-BR-6563-01A 60 years, male, white, stage:Stage IIB, alive, 1190 days 3542.6
TCGA-CD-8534-01A 41 years, male, asian, stage:Stage II, alive, 367 days 3536.9
TCGA-BR-A4J6-01A 69 years, female, white, stage:Stage IIA, alive, 20 days 3520.4
TCGA-BR-8286-01A 49 years, male, white, stage:Stage II, alive, 895 days 3511.3
TCGA-CD-8535-01A 59 years, male, asian, stage:Stage IIIA, alive, 390 days 3497.4
TCGA-CG-4469-01A 70 years, male, stage:Stage IV, dead, 215 days 3497.2
TCGA-CG-5724-01A 59 years, male, stage:Stage IV, dead, 366 days 3483.1
TCGA-CG-4438-01A 56 years, male, stage:Stage IV, alive, 1645 days 3452.7
TCGA-D7-6519-01A 64 years, female, white, stage:'--, alive, 625 days 3414.1
TCGA-BR-8589-01A 56 years, male, white, stage:Stage IIIB, alive, 825 days 3411.4
TCGA-BR-A4PF-01A 72 years, male, white, stage:Stage IIIB, alive, 35 days 3372.0
TCGA-BR-A4J7-01A 49 years, male, asian, stage:Stage IIB, alive, 989 days 3340.2
TCGA-CD-5801-01A 69 years, male, asian, stage:Stage IIIA, dead, 401 days 3280.4
TCGA-VQ-A928-01A 49 years, male, white, stage:Stage IV, dead, 174 days 3269.5
TCGA-D7-A4YX-01A 63 years, male, white, stage:Stage IIB, alive, 1108 days 3258.5
TCGA-B7-5818-01A 62 years, male, white, stage:Stage IB, alive, 356 days 3217.0
TCGA-CG-5726-01A 73 years, male, stage:Stage IA, dead, 881 days 3198.2
TCGA-HF-A5NB-01A 75 years, female, stage:Stage IIIC, alive, 928 days 3197.4
TCGA-VQ-A8E3-01A 79 years, male, white, stage:Stage IIA, dead, 661 days 3174.2
TCGA-VQ-A8PC-01A 65 years, male, white, stage:Stage IIIA, dead, 1407 days 3171.1
TCGA-VQ-A8PU-01A 72 years, female, white, stage:Stage IIIA, dead, 832 days 3169.1
TCGA-D7-A6EV-01A 71 years, female, white, stage:Stage IIB, alive, 342 days 3122.5
TCGA-VQ-A8DV-01A 48 years, male, white, stage:Stage IB, dead, 403 days 3120.4
TCGA-R5-A805-01A 71 years, male, white, stage:Stage IIIB, dead, 281 days 3081.7
TCGA-CD-8524-01A 61 years, female, asian, stage:Stage II, alive, 388 days 3052.4
TCGA-VQ-A8PB-01A 65 years, female, white, stage:Stage II, dead, 1043 days 3051.4
TCGA-BR-6564-01A 46 years, female, white, stage:Stage IIIA, dead, 794 days 3051.4
TCGA-BR-6453-01A 54 years, male, white, stage:Stage IIA, alive, 485 days 3050.9
TCGA-B7-A5TI-01A 52 years, male, white, stage:Stage IIIC, alive, 595 days 2977.7
TCGA-SW-A7EA-01A 61 years, female, white, stage:Stage IB, alive, 579 days 2974.6
TCGA-HJ-7597-01A 71 years, female, white, stage:Stage IB, dead, 805 days 2944.6
TCGA-CD-8525-01A 82 years, female, asian, stage:Stage IIIA, alive, 383 days 2939.1
TCGA-VQ-A94R-01A 63 years, male, white, stage:'--, dead, 1294 days 2933.3
TCGA-BR-4253-01A 80 years, female, white, stage:Stage IIIA, dead, 124 days 2918.5
TCGA-BR-8690-01A 54 years, female, white, stage:Stage IIIB, alive, 325 days 2910.8
TCGA-BR-6455-01A 59 years, male, white, stage:Stage IIB, dead, 422 days 2902.7
TCGA-HU-8238-01A 56 years, male, asian, stage:'--, alive, 46 days 2887.0
TCGA-HU-8249-01A 76 years, male, asian, stage:Stage IIIA, alive, 881 days 2880.3
TCGA-RD-A8N5-01A 78 years, male, white, stage:Stage IIIA, dead, 1747 days 2861.8
TCGA-D7-8573-01A 57 years, male, white, stage:Stage IIA, alive, 593 days 2849.5
TCGA-D7-8572-01A 57 years, male, white, stage:Stage IIB, alive, 511 days 2820.7
TCGA-VQ-A8E2-01A 57 years, male, asian, stage:Stage IIIB, alive, 1319 days 2820.0
TCGA-BR-6705-01A 68 years, female, white, stage:Stage IIIB, dead, 779 days 2814.6
TCGA-VQ-A91X-01A 74 years, male, white, stage:Stage IIIB, dead, 289 days 2806.5
TCGA-BR-8677-01A 74 years, female, white, stage:Stage IIIB, alive, 813 days 2800.0
TCGA-HU-A4H6-01A 72 years, female, asian, stage:Stage IIIA, alive, 644 days 2787.3
TCGA-BR-8371-01A 62 years, male, white, stage:Stage IIIB, dead, 359 days 2785.5
TCGA-BR-A44U-01A 70 years, male, white, stage:Stage IIIB, dead, 422 days 2783.3
TCGA-BR-7707-01A 69 years, female, white, stage:Stage IB, alive, 1090 days 2777.3
TCGA-VQ-AA6J-01A 75 years, male, black or african american, stage:Stage IIIB, alive, 838 days 2749.6
TCGA-CD-5813-01A 60 years, male, asian, stage:Stage II, dead, 377 days 2749.5
TCGA-VQ-A91S-01A 63 years, male, black or african american, stage:Stage IIIB, alive, 1000 days 2744.6
TCGA-HU-A4HD-01A 73 years, male, asian, stage:Stage IIIA, alive, 1016 days 2743.6
TCGA-CD-A489-01A 58 years, male, asian, stage:Stage IIA, dead, 344 days 2737.3
TCGA-CG-4306-01A 90 years, male, stage:Stage IV, dead, 1 days 2731.9
TCGA-B7-A5TN-01A 60 years, male, white, stage:Stage IIB, alive, 287 days 2727.8
TCGA-F1-6875-01A 79 years, male, black or african american, stage:Stage IA, dead, 2197 days 2723.5
TCGA-CG-5725-01A 72 years, male, stage:Stage IB, dead, 457 days 2714.4
TCGA-VQ-A94T-01A 73 years, male, stage:Stage IIIB, dead, 342 days 2713.0
TCGA-BR-7704-01A 69 years, female, white, stage:Stage II, alive, 1072 days 2697.2
TCGA-BR-6566-01A 64 years, female, white, stage:Stage IIA, alive, 997 days 2692.0
TCGA-BR-7959-01A 59 years, male, white, stage:Stage IIIA, alive, 1010 days 2683.1
TCGA-HF-7133-01A female, stage:Stage IV, alive, 1918 days 2661.7
TCGA-VQ-AA64-01A 68 years, male, white, stage:Stage IIIB, dead, 560 days 2648.4
TCGA-IN-A6RI-01A 45 years, male, white, stage:Stage I, alive, 559 days 2642.2
TCGA-BR-8372-01A 63 years, male, white, stage:Stage IIIC, alive, 951 days 2628.8
TCGA-B7-A5TK-01A 51 years, male, white, stage:Stage IIIA, alive, 288 days 2628.5
TCGA-RD-A7BW-01A 68 years, female, white, stage:Stage IB, dead, 156 days 2614.7
TCGA-RD-A8N6-01A 78 years, female, white, stage:Stage IIIA, dead, 272 days 2609.1
TCGA-VQ-A8DU-01A 63 years, male, white, stage:Stage IIIA, dead, 166 days 2601.2
TCGA-HU-A4H0-01A 72 years, male, asian, stage:Stage IIIC, alive, 64 days 2598.2
TCGA-CD-A4MG-01A 76 years, male, asian, stage:Stage IIA, dead, 200 days 2581.4
TCGA-CD-5803-01A 78 years, female, asian, stage:Stage II, dead, 341 days 2575.0
TCGA-HU-A4H3-01A 56 years, female, asian, stage:Stage IIIC, alive, 882 days 2559.2
TCGA-KB-A93H-01A 79 years, female, asian, stage:Stage IIB, alive, 1145 days 2554.7
TCGA-D7-5577-01A 53 years, female, white, stage:Stage IIIA, dead, 782 days 2549.9
TCGA-BR-7957-01A 50 years, female, white, stage:Stage IV, dead, 276 days 2549.5
TCGA-BR-8588-01A 55 years, female, white, stage:Stage IIB, alive, 389 days 2549.4
TCGA-HU-A4G9-01A 67 years, female, asian, stage:Stage IA, alive, 736 days 2540.4
TCGA-CD-8533-01A 48 years, male, asian, stage:Stage II, alive, 468 days 2527.0
TCGA-VQ-A8P3-01A 72 years, male, white, stage:Stage IIIA, alive, 1132 days 2510.1
TCGA-D7-A6EY-01A 72 years, female, white, stage:Stage IIIB, dead, 348 days 2493.5
TCGA-VQ-A8PP-01A 76 years, male, stage:Stage IV, dead, 712 days 2490.9
TCGA-HU-A4GX-01A 70 years, female, asian, stage:Stage IIIC, alive, 616 days 2490.0
TCGA-BR-8381-01A 51 years, male, white, stage:Stage IIB, alive, 224 days 2489.7
TCGA-RD-A7C1-01A 82 years, male, white, stage:Stage IB, dead, 507 days 2483.1
TCGA-VQ-AA6F-01A 57 years, male, white, stage:Stage IIB, alive, 1646 days 2482.7
TCGA-CG-5723-01A 83 years, male, stage:Stage II, alive, 2496 days 2469.9
TCGA-IN-A6RS-01A 76 years, male, white, stage:Stage IA, alive, 383 days 2464.7
TCGA-VQ-A8P5-01A 67 years, male, white, stage:Stage IIA, dead, 235 days 2453.1
TCGA-VQ-A91Q-01A 61 years, male, stage:Stage IV, dead, 633 days 2447.7
TCGA-IN-A6RN-01A 72 years, female, white, stage:Stage IIA, alive, 594 days 2432.0
TCGA-BR-A44T-01A 53 years, female, white, stage:Stage IIA, alive, 1038 days 2413.5
TCGA-BR-8678-01A 76 years, male, white, stage:Stage IB, alive, 754 days 2412.1
TCGA-HU-A4G8-01A 71 years, female, asian, stage:Stage IIB, alive, 690 days 2406.8
TCGA-VQ-A8DT-01A 43 years, male, stage:Stage IIIB, alive, 1484 days 2404.4
TCGA-CG-4465-01A 69 years, female, stage:Stage IV, dead, 274 days 2390.5
TCGA-CG-4460-01A 66 years, female, stage:Stage IV, dead, 669 days 2388.3
TCGA-CD-5798-01A 82 years, male, asian, stage:Stage II, alive, 408 days 2386.4
TCGA-IN-8663-01A 68 years, male, white, stage:Stage IIB, dead, 103 days 2374.3
TCGA-VQ-A924-01A 69 years, male, stage:Stage II, dead, 1686 days 2373.8
TCGA-D7-6522-01A 58 years, male, white, stage:Stage IB, alive, 566 days 2368.0
TCGA-CD-5800-01A 51 years, female, asian, stage:Stage II, alive, 400 days 2359.8
TCGA-CD-A48C-01A 79 years, female, asian, stage:Stage IIB, dead, 353 days 2354.7
TCGA-BR-7197-01A 69 years, male, white, stage:Stage II, alive, 280 days 2353.4
TCGA-BR-8373-01A 65 years, female, white, stage:Stage IIIA, alive, 450 days 2350.9
TCGA-BR-8485-01A 68 years, female, white, stage:Stage IIIC, alive, 280 days 2349.9
TCGA-D7-8575-01A 75 years, male, white, stage:Stage IIIA, dead, 554 days 2349.6
TCGA-KB-A6F7-01A 54 years, female, stage:Stage IB, alive, 1935 days 2347.7
TCGA-HU-A4GD-01A 56 years, male, asian, stage:Stage IIB, alive, 692 days 2342.1
TCGA-BR-4191-01A 72 years, male, white, stage:'--, dead, 558 days 2335.7
TCGA-D7-8574-01A 72 years, male, white, stage:Stage IIIA, alive, 523 days 2329.8
TCGA-HU-8610-01A 75 years, male, asian, stage:Stage IA, alive, 23 days 2325.7
TCGA-BR-7722-01A 62 years, male, white, stage:Stage IIB, dead, 466 days 2313.0
TCGA-F1-A72C-01A 68 years, male, asian, stage:Stage IIA, alive, 346 days 2310.5
TCGA-BR-A4J9-01A 55 years, male, white, stage:Stage IIA, alive, 14 days 2307.5
TCGA-HU-A4H4-01A 53 years, female, asian, stage:Stage IIB, alive, 725 days 2305.7
TCGA-BR-8380-01A 55 years, male, white, stage:Stage IIIC, dead, 21 days 2300.4
TCGA-VQ-A8PX-01A 51 years, male, stage:Stage IA, alive, 1964 days 2295.1
TCGA-RD-A7BS-01A 46 years, male, white, stage:Stage IIIA, dead, 336 days 2292.2
TCGA-IN-AB1V-01A 63 years, male, white, stage:Stage IA, alive, 479 days 2282.0
TCGA-D7-6526-01A 67 years, female, white, stage:Stage IIIA, alive, 523 days 2281.3
TCGA-HU-8244-01A 77 years, female, asian, stage:Stage IA, alive, 742 days 2247.0
TCGA-BR-7723-01A 59 years, male, white, stage:Stage IIIB, dead, 874 days 2241.8
TCGA-CD-8531-01A 66 years, female, asian, stage:Stage IIIA, alive, 383 days 2232.4
TCGA-CG-4305-01A 69 years, male, stage:Stage II, alive, 485 days 2216.7
TCGA-BR-6457-01A 69 years, male, white, stage:Stage IIA, alive, 416 days 2212.6
TCGA-D7-A748-01A 41 years, female, white, stage:Stage IV, dead, 132 days 2196.1
TCGA-BR-A4CS-01A 77 years, male, white, stage:Stage IIIC, dead, 45 days 2194.3
TCGA-VQ-AA6D-01A 52 years, female, stage:Stage IIIA, alive, 521 days 2188.5
TCGA-RD-A8NB-01A 80 years, female, white, stage:Stage IIIA, dead, 513 days 2182.3
TCGA-MX-A663-01A 66 years, male, white, stage:Stage IIA, dead, 300 days 2178.6
TCGA-VQ-A8PO-01A 74 years, male, white, stage:Stage IIB, dead, 282 days 2174.7
TCGA-CG-5722-01A 67 years, female, stage:Stage IV, alive, 30 days 2174.3
TCGA-BR-8687-01A 67 years, female, white, stage:Stage IIIC, dead, 250 days 2167.7
TCGA-BR-8080-01A 72 years, female, white, stage:Stage IIIC, dead, 292 days 2162.3
TCGA-HU-A4GC-01A 74 years, male, asian, stage:Stage IIIB, alive, 99 days 2161.1
TCGA-BR-8367-01A 55 years, male, white, stage:Stage IIIB, dead, 801 days 2155.7
TCGA-CG-5719-01A 54 years, female, stage:Stage IV, alive, 31 days 2155.4
TCGA-MX-A5UJ-01A 86 years, female, white, stage:Stage IIIA, alive, 600 days 2153.3
TCGA-IN-AB1X-01A 78 years, female, white, stage:Stage IIA, alive, 411 days 2146.1
TCGA-FP-8210-01A 48 years, male, asian, stage:Stage IIIA, dead, 153 days 2140.5
TCGA-BR-8591-01A 79 years, male, white, stage:Stage IIIC, alive, 856 days 2140.3
TCGA-VQ-A8PJ-01A 53 years, male, stage:Stage IV, dead, 82 days 2125.8
TCGA-BR-4257-01A 79 years, female, white, stage:'--, dead, 294 days 2124.8
TCGA-D7-A6F0-01A 79 years, female, white, stage:Stage IB, alive, 678 days 2122.2
TCGA-CG-5732-01A 66 years, male, stage:Stage IV, dead, 2100 days 2121.5
TCGA-VQ-AA69-01A 35 years, male, white, stage:Stage IIIA, alive, 864 days 2118.3
TCGA-BR-8081-01A 71 years, female, white, stage:Stage IIB, alive, 981 days 2117.8
TCGA-D7-5578-01A 80 years, male, white, stage:Stage IIIA, alive, 385 days 2087.2
TCGA-HU-A4H2-01A 58 years, female, asian, stage:Stage IIIB, alive, 394 days 2076.2
TCGA-BR-4267-01A 51 years, male, white, stage:Stage IB, dead, 188 days 2075.4
TCGA-MX-A666-01A 61 years, male, white, stage:Stage IIA, alive, 427 days 2072.3
TCGA-IN-A6RL-01A 84 years, male, white, stage:'--, dead, 406 days 2068.0
TCGA-BR-4280-01A 78 years, female, white, stage:Stage III, dead, 201 days 2067.2
TCGA-VQ-A91E-01A 67 years, female, white, stage:Stage IIIB, alive, 664 days 2062.0
TCGA-BR-8284-01A 72 years, female, white, stage:Stage IIIC, dead, 245 days 2054.6
TCGA-HU-A4G3-01A 54 years, male, asian, stage:Stage IIB, alive, 170 days 2049.9
TCGA-VQ-A8PQ-01A 50 years, female, white, stage:Stage IV, dead, 476 days 2049.1
TCGA-CG-5721-01A 58 years, male, stage:Stage IV, alive, 183 days 2046.0
TCGA-IN-A7NT-01A 73 years, female, white, stage:Stage IIB, alive, 323 days 2042.7
TCGA-IN-A7NR-01A 64 years, female, white, stage:Stage IV, alive, 198 days 2032.5
TCGA-SW-A7EB-01A 45 years, male, white, stage:Stage IIIA, alive, 176 days 2031.5
TCGA-BR-8297-01A 58 years, male, white, stage:Stage IIIC, alive, 225 days 2031.0
TCGA-BR-6458-01A 57 years, female, white, stage:Stage IIB, dead, 588 days 2021.3
TCGA-R5-A7ZI-01A 44 years, female, white, stage:Stage IV, alive, 2267 days 2008.2
TCGA-BR-4187-01A 56 years, male, white, stage:'--, dead, 141 days 2005.4
TCGA-IN-A6RJ-01A 64 years, male, white, stage:Stage IA, alive, 379 days 2001.2
TCGA-BR-8382-01A 67 years, female, white, stage:Stage IIIC, dead, 762 days 1998.2
TCGA-HU-A4GF-01A 69 years, male, asian, stage:Stage IIA, alive, 785 days 1996.8
TCGA-BR-8590-01A 62 years, male, white, stage:Stage IIIC, dead, 284 days 1996.7
TCGA-BR-8368-01A 84 years, female, white, stage:Stage IB, alive, 131 days 1996.7
TCGA-BR-8686-01A 69 years, male, asian, stage:Stage IIIB, dead, 635 days 1989.5
TCGA-BR-A4J5-01A 56 years, male, asian, stage:Stage IIIA, alive, 862 days 1988.7
TCGA-D7-6818-01A 53 years, male, white, stage:Stage IIIA, dead, 376 days 1985.6
TCGA-BR-8592-01A 63 years, female, white, stage:Stage IIIB, dead, 191 days 1984.1
TCGA-VQ-A8PD-01A 69 years, male, white, stage:Stage IIIC, dead, 496 days 1981.0
TCGA-D7-6815-01A 70 years, female, white, stage:Stage IIB, alive, 486 days 1966.4
TCGA-VQ-A8PE-01A 78 years, male, white, stage:Stage IIIB, dead, 675 days 1962.1
TCGA-BR-8365-01A 70 years, female, white, stage:Stage IIA, dead, 533 days 1941.0
TCGA-BR-8295-01A 60 years, female, white, stage:Stage IIB, dead, 67 days 1934.9
TCGA-HU-A4GJ-01A 60 years, female, asian, stage:Stage IIIC, alive, 650 days 1932.4
TCGA-BR-7196-01A 64 years, male, white, stage:Stage IV, alive, 666 days 1926.6
TCGA-FP-A4BF-01A 68 years, male, white, stage:Stage IIIA, dead, 168 days 1917.5
TCGA-D7-A4YU-01A 73 years, male, white, stage:Stage IIIB, alive, 500 days 1916.5
TCGA-BR-7958-01A 60 years, male, white, stage:Stage IIIB, alive, 899 days 1914.1
TCGA-RD-A8N9-01A 63 years, female, asian, stage:Stage II, alive, 1083 days 1902.8
TCGA-HU-8604-01A 82 years, female, asian, stage:Stage IIA, alive, 694 days 1899.5
TCGA-D7-6524-01A 53 years, male, white, stage:Stage II, alive, 543 days 1899.3
TCGA-HU-A4GY-01A 76 years, female, asian, stage:Stage IIIA, alive, 8 days 1889.9
TCGA-BR-8058-01A 53 years, female, white, stage:Stage IIIB, alive, 1133 days 1884.9
TCGA-BR-8364-01A 42 years, female, white, stage:Stage IIIC, alive, 675 days 1877.2
TCGA-VQ-A94O-01A 74 years, male, black or african american, stage:Stage IIIC, dead, 640 days 1876.4
TCGA-FP-A9TM-01A 77 years, male, white, stage:'--, alive, 189 days 1872.3
TCGA-R5-A7ZF-01A 65 years, female, black or african american, stage:Stage IV, dead, 259 days 1872.2
TCGA-BR-8682-01A 52 years, male, asian, stage:Stage IIB, alive, 991 days 1870.7
TCGA-VQ-A91K-01A 69 years, male, white, stage:Stage IIIA, alive, 1862 days 1867.3
TCGA-D7-A6F2-01A 62 years, male, white, stage:Stage IB, alive, 476 days 1860.8
TCGA-BR-A4J4-01A 39 years, male, asian, stage:Stage IIIB, alive, 16 days 1845.6
TCGA-VQ-A8P8-01A 72 years, female, black or african american, stage:Stage IIB, alive, 942 days 1838.5
TCGA-BR-8366-01A 80 years, female, white, stage:Stage IIA, alive, 29 days 1837.1
TCGA-CG-4477-01A 58 years, female, stage:Stage IB, alive, 942 days 1831.3
TCGA-RD-A8N1-01A 70 years, male, white, stage:Stage IIIB, alive, 3519 days 1814.7
TCGA-ZA-A8F6-01A 71 years, male, white, stage:Stage IB, alive, 525 days 1809.3
TCGA-RD-A8MW-01A 72 years, male, white, stage:Stage IIIB, dead, 1153 days 1798.7
TCGA-BR-8683-01A 75 years, male, asian, stage:Stage IIIB, dead, 300 days 1784.9
TCGA-BR-4256-01A 80 years, male, white, stage:'--, dead, 284 days 1783.3
TCGA-RD-A8N0-01A 53 years, female, white, stage:Stage IIIB, alive, 1236 days 1782.3
TCGA-VQ-A8DZ-01A 70 years, male, black or african american, stage:Stage IV, dead, 396 days 1780.4
TCGA-CG-4301-01A 75 years, female, stage:Stage IV, alive, 92 days 1771.5
TCGA-VQ-A91U-01A 78 years, male, asian, stage:Stage IIIA, dead, 52 days 1760.2
TCGA-FP-8099-01A 79 years, male, white, stage:Stage IIA, alive, 519 days 1753.3
TCGA-CG-4475-01A 76 years, male, stage:Stage IIB, alive, 699 days 1734.2
TCGA-BR-8384-01A 69 years, male, white, stage:Stage IIIC, alive, 113 days 1730.7
TCGA-D7-A747-01A 57 years, male, white, stage:Stage IIB, dead, 255 days 1725.3
TCGA-HU-A4HB-01A 68 years, male, asian, stage:Stage IIB, dead, 477 days 1722.4
TCGA-VQ-A927-01A 81 years, male, white, stage:Stage IIIB, dead, 200 days 1709.6
TCGA-HF-7134-01A male, stage:Stage IA, alive, 1588 days 1706.9
TCGA-VQ-A91V-01A 58 years, male, stage:Stage IIIA, alive, 1297 days 1701.3
TCGA-VQ-AA6G-01A 68 years, male, white, stage:Stage IIA, dead, 792 days 1700.9
TCGA-IN-8462-01A 80 years, male, white, stage:Stage IIB, alive, 572 days 1699.0
TCGA-VQ-A94P-01A 57 years, male, white, stage:'--, dead, 81 days 1696.2
TCGA-BR-A4IV-01A 47 years, male, asian, stage:Stage IIIB, dead, 869 days 1693.2
TCGA-VQ-A92D-01A 67 years, male, white, stage:Stage IB, alive, 2032 days 1693.2
TCGA-BR-6802-01A 65 years, male, white, stage:Stage IIIA, alive, 940 days 1691.1
TCGA-ZQ-A9CR-01A 79 years, female, white, stage:Stage IIIC, dead, 24 days 1691.0
TCGA-R5-A7O7-01A 51 years, male, white, stage:Stage IV, alive, 1389 days 1685.7
TCGA-FP-8209-01A 49 years, male, white, stage:Stage IB, dead, 1811 days 1681.7
TCGA-VQ-A8PF-01A 76 years, male, stage:Stage IIIB, dead, 76 days 1677.5
TCGA-CG-4466-01A 81 years, female, stage:Stage IB, alive, 577 days 1671.1
TCGA-BR-6801-01A 70 years, male, white, stage:Stage IIA, alive, 1223 days 1666.0
TCGA-BR-A4J8-01A 71 years, female, white, stage:Stage IIIB, alive, 411 days 1664.8
TCGA-CD-5799-01A 45 years, male, asian, stage:Stage II, alive, 396 days 1654.9
TCGA-BR-6565-01A 67 years, male, white, stage:Stage IIB, dead, 279 days 1653.7
TCGA-CD-8528-01A 43 years, female, asian, stage:Stage IIIA, alive, 375 days 1649.6
TCGA-F1-A448-01A 70 years, male, white, stage:Stage IIIB, alive, 647 days 1647.8
TCGA-D7-6520-01A 53 years, male, white, stage:Stage IIIA, alive, 573 days 1647.7
TCGA-CG-5720-01A 71 years, male, stage:Stage IB, dead, 30 days 1647.2
TCGA-VQ-AA6K-01A 59 years, male, white, stage:Stage IIIC, dead, 378 days 1643.5
TCGA-BR-8296-01A 58 years, female, white, stage:Stage IIIC, dead, 474 days 1642.8
TCGA-MX-A5UG-01A 78 years, male, asian, stage:Stage IIIA, dead, 113 days 1637.8
TCGA-CG-4443-01A 68 years, male, stage:Stage IA, alive, 912 days 1630.7
TCGA-D7-8570-01A 44 years, male, white, stage:Stage IIIB, alive, 752 days 1628.0
TCGA-HF-7132-01A male, stage:Stage II, alive, 2351 days 1623.2
TCGA-BR-6456-01A 74 years, female, white, stage:Stage IIB, dead, 526 days 1589.4
TCGA-BR-7851-01A 74 years, male, white, stage:Stage IIB, dead, 574 days 1589.4
TCGA-CG-4440-01A 68 years, female, stage:Stage IV, dead, 122 days 1582.4
TCGA-HU-8608-01A 70 years, male, asian, stage:Stage IIIB, alive, 641 days 1579.6
TCGA-D7-8576-01A 54 years, female, white, stage:Stage IIIB, dead, 446 days 1570.7
TCGA-IN-A6RR-01A 84 years, male, white, stage:'--, dead, 205 days 1569.1
TCGA-BR-6709-01A 57 years, female, white, stage:Stage IIIB, dead, 370 days 1554.6
TCGA-VQ-A922-01A 70 years, male, stage:Stage IV, dead, 275 days 1553.8
TCGA-CD-A486-01A 68 years, male, asian, stage:Stage IIA, dead, 192 days 1537.9
TCGA-BR-6452-01A 78 years, female, white, stage:Stage IIA, alive, 1055 days 1531.6
TCGA-D7-A4Z0-01A 60 years, female, white, stage:Stage IIB, alive, 449 days 1520.9
TCGA-CD-A48A-01A 57 years, male, asian, stage:Stage IIA, alive, 378 days 1515.1
TCGA-CD-8532-01A 52 years, male, asian, stage:Stage II, dead, 354 days 1492.3
TCGA-F1-6874-01A 79 years, male, white, stage:Stage IB, alive, 440 days 1483.8
TCGA-RD-A8N2-01A 59 years, female, white, stage:Stage IB, alive, 3540 days 1483.8
TCGA-CG-4441-01A 83 years, male, stage:Stage IIIA, dead, 426 days 1475.1
TCGA-BR-6803-01A 54 years, female, white, stage:Stage IIA, alive, 949 days 1468.5
TCGA-BR-8484-01A 61 years, male, white, stage:Stage IIIA, dead, 766 days 1467.9
TCGA-VQ-AA68-01A 52 years, female, white, stage:Stage IIIC, alive, 1328 days 1444.8
TCGA-BR-8483-01A 59 years, male, white, stage:Stage IIIA, alive, 164 days 1432.7
TCGA-BR-7901-01A 74 years, male, white, stage:Stage IIB, dead, 105 days 1424.9
TCGA-D7-6527-01A 62 years, male, white, stage:Stage II, dead, 312 days 1418.9
TCGA-3M-AB46-01A 70 years, male, white, stage:Stage IB, alive, 1765 days 1418.1
TCGA-FP-8211-01A 62 years, male, white, stage:Stage IIB, alive, 413 days 1417.3
TCGA-D7-6822-01A 77 years, male, white, stage:Stage IB, alive, 375 days 1414.7
TCGA-VQ-A8E0-01A 68 years, male, black or african american, stage:Stage IIIA, dead, 562 days 1408.9
TCGA-FP-7916-01A 77 years, male, asian, stage:Stage IIIC, dead, 428 days 1404.7
TCGA-CG-5734-01A 68 years, male, stage:Stage IIIA, dead, 243 days 1376.9
TCGA-D7-8579-01A 66 years, female, white, stage:Stage IIB, alive, 636 days 1371.2
TCGA-FP-7735-01A 77 years, male, black or african american, stage:Stage IB, dead, 106 days 1370.0
TCGA-CG-5717-01A 58 years, male, stage:Stage II, dead, 212 days 1364.2
TCGA-CD-A4MH-01A 86 years, female, asian, stage:Stage IIA, alive, 371 days 1363.6
TCGA-IP-7968-01A 74 years, male, white, stage:Stage IIIB, alive, 77 days 1354.1
TCGA-BR-8291-01A 61 years, male, white, stage:Stage IIB, dead, 607 days 1339.9
TCGA-VQ-A91Y-01A 67 years, male, white, stage:Stage IIIC, dead, 296 days 1337.0
TCGA-BR-6852-01A 64 years, female, white, stage:Stage IIA, alive, 1367 days 1332.6
TCGA-CD-8529-01A 65 years, male, asian, stage:Stage IV, alive, 374 days 1326.2
TCGA-D7-6528-01A 70 years, female, white, stage:Stage IB, alive, 463 days 1319.3
TCGA-B7-A5TJ-01A 74 years, male, white, stage:Stage IIB, alive, 335 days 1286.4
TCGA-BR-7716-01A 62 years, female, white, stage:Stage IIB, alive, 1210 days 1249.5
TCGA-EQ-8122-01A 71 years, female, white, stage:Stage IIB, dead, 243 days 1248.3
TCGA-KB-A93G-01A 68 years, male, white, stage:Stage IB, alive, 613 days 1236.6
TCGA-FP-7829-01A 69 years, male, white, stage:Stage IIB, alive, 594 days 1232.7
TCGA-R5-A7ZR-01A 70 years, female, black or african american, stage:Stage III, dead, 185 days 1219.8
TCGA-RD-A8N4-01A 58 years, female, white, stage:Stage IIIA, alive, 2171 days 1218.3
TCGA-FP-A8CX-01A 60 years, male, white, stage:Stage IIIC, alive, 7 days 1176.0
TCGA-FP-8631-01A 68 years, male, white, stage:Stage IIIA, alive, 17 days 1146.3
TCGA-BR-8060-01A 75 years, female, white, stage:Stage IIB, dead, 348 days 1129.1
TCGA-D7-6521-01A 65 years, male, white, stage:'--, alive, 564 days 1063.5
TCGA-CG-4436-01A 57 years, male, stage:Stage IB, alive, 243 days 1062.0
TCGA-VQ-A8PM-01A 56 years, male, white, stage:Stage IV, dead, 57 days 1051.5
TCGA-FP-7998-01A 77 years, male, white, stage:Stage IIIC, alive, 678 days 1045.8
TCGA-CD-8526-01A 73 years, female, asian, stage:Stage IIIA, alive, 381 days 1006.2
TCGA-VQ-A8PK-01A 58 years, male, white, stage:Stage IIIB, dead, 543 days 890.6
TCGA-D7-8578-01A 72 years, male, white, stage:Stage IB, alive, 643 days 867.5
TCGA-HU-A4GH-01A 75 years, male, asian, stage:Stage IA, alive, 358 days 836.4
TCGA-KB-A93J-01A 78 years, male, white, stage:Stage II, alive, 1124 days 809.2
TCGA-VQ-AA6A-01A 56 years, male, white, stage:Stage IIIC, alive, 1184 days 648.3
TCGA-CG-5718-01A 78 years, female, stage:Stage II, dead, 1095 days 613.4
TCGA-BR-6710-01A 41 years, male, white, stage:Stage IB, alive, 273 days 496.9
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STOMACH CANCER - Protein expressioni

A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.

Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.

 

Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.


Antibody HPA003364
 Staining
  High
  Medium
  Low
  Not detected
 Intensity
  Strong
  Moderate
  Weak
  Negative
 Quantity
  >75%
  75%-25%
  <25%
  None
 Location
  Nuclear
  Cytoplasmic/membranous
  Cytoplasmic/membranous,nuclear
  None
Adenocarcinoma, NOS

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