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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1644.7 nTPM
HPA:1644.7 nTPM
GTEx:1269.7 nTPM
FANTOM5:2296.9 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA003364
Glandular cells Medium



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1644.7
overview
Male, age 65
Small intestine sample 232
nTPM: 2127.4
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 1563.4
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 1300.5
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 1587.3

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1269.7
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 1269.7
Samples: 187

Max nTPM: 3395.6
Min nTPM: 461.4
Std nTPM: 459.0
Median nTPM: 1187.4
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 3395.6
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 2632.7
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 2516.3
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 2454.9
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 2437.0
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 2372.9
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 2254.6
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 2228.2
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 2173.4
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 2167.8
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 2128.9
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 2111.9
GTEX-183FY-1626-SM-793D8 20-29 years, male 2083.7
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 2082.4
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 1951.8
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 1948.6
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 1937.1
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 1888.3
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 1865.1
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 1839.5
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 1805.5
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 1802.4
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 1794.1
GTEX-1192X-2526-SM-59868 50-59 years, male 1777.7
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 1767.3
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 1762.4
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 1749.7
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 1747.9
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 1737.7
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 1735.2
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 1728.1
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 1697.9
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 1685.0
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 1679.0
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 1644.4
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 1636.6
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 1609.0
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 1565.5
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 1554.4
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 1551.6
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 1547.8
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 1540.0
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 1525.2
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 1524.4
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 1514.5
GTEX-1C475-1426-SM-793CH 40-49 years, female 1509.0
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 1503.4
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 1500.1
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 1493.0
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 1485.3
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 1470.6
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 1469.8
GTEX-117YX-0326-SM-5GICL 50-59 years, male 1449.7
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 1441.5
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 1430.8
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 1430.3
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 1404.0
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 1402.7
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 1401.9
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 1392.7
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 1390.5
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 1389.0
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 1387.9
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 1387.2
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 1385.6
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 1355.7
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 1353.4
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 1340.6
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 1325.4
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 1323.2
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 1317.5
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 1317.2
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 1316.5
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 1310.7
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 1308.6
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 1302.4
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 1299.5
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 1297.6
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 1297.4
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 1294.8
GTEX-13O61-1326-SM-5KM31 60-69 years, male 1284.0
GTEX-14PKU-1626-SM-6871C 40-49 years, female 1280.5
GTEX-13111-1426-SM-5DUW3 50-59 years, male 1272.3
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 1268.6
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 1244.1
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 1241.4
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 1241.0
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 1228.9
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 1218.4
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 1204.9
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 1199.6
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 1198.7
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 1191.4
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 1187.4
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 1172.0
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 1165.3
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 1165.0
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 1149.4
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 1144.8
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 1143.6
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 1134.1
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 1133.5
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 1123.4
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 1121.1
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 1118.5
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 1117.8
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 1117.4
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 1115.3
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 1110.3
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 1101.9
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 1099.6
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 1082.0
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 1072.8
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 1072.5
GTEX-14PK6-1626-SM-6871I 70-79 years, female 1060.4
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 1059.4
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 1056.5
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 1053.6
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 1040.8
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 1038.1
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 1033.9
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 1033.4
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 1030.3
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 1024.8
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 1017.8
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 1014.3
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 993.2
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 990.3
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 989.7
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 988.0
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 984.0
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 982.2
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 978.5
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 977.6
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 971.8
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 969.7
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 963.7
GTEX-13113-1226-SM-5EGHT 60-69 years, female 961.5
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 952.2
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 951.0
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 935.2
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 932.0
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 930.1
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 925.7
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 917.5
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 916.6
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 915.8
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 912.1
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 901.7
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 898.5
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 890.2
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 883.7
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 878.6
GTEX-144GM-1026-SM-79OKU 20-29 years, male 876.2
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 873.6
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 861.9
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 860.5
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 854.2
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 844.0
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 840.5
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 838.9
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 816.5
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 805.6
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 802.5
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 800.5
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 792.5
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 777.5
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 774.4
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 771.5
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 763.6
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 742.0
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 735.8
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 710.7
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 710.0
GTEX-YFCO-1326-SM-664NV 40-49 years, male 708.7
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 701.2
GTEX-1122O-1326-SM-5H11F 60-69 years, female 686.7
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 679.4
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 677.8
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 661.8
GTEX-14PN3-2026-SM-68729 60-69 years, female 659.1
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 651.9
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 624.0
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 595.3
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 589.0
GTEX-ZTSS-0926-SM-59865 40-49 years, male 570.0
GTEX-111YS-1426-SM-5GID8 60-69 years, male 461.4
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

2296.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 2296.9
FF:10024-101D6 15,40,85 years, mixed 2296.9

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