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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Mouse brain, Intensity
Medulla oblongatai

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

145.082
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:368.7 nTPM
FANTOM5:93.4 Scaled Tags Per Million
Pig:224.4 nTPM
Allen mouse:16.4 Expression energy

MEDULLA OBLONGATA - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

, antibody CAB079000
Medulla oblongata mean intensity 145.082
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

FRONT BACK
Nucleus of the solitary tract 117.198
Raphe magnus nucleus 118.395
Cochlear nucleus 107.489
Lateral paragigantocellular nucleus 102.423
Raphe pallidus nucleus 48.891
Facial nucleus 89.845
Hypoglossal nucleus 126.666
Ambiguus nucleus 94.469
External cuneate nucleus 89.762
Inferior olivary nucleus 113.547
Raphe obscures nucleus 48.389
Dorsal motor nucleus of vagus 80.943

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

368.7
Sample id Sample description nTPM
Area postrema
nTPM: 69.6
2054 Male, age 76, both hemispheres 118.7
2306 Male, age 80, both hemispheres 60.3
2799 Male, age 61, both hemispheres 29.9
Dorsal medullary reticular nucleus
nTPM: 198.6
2040 Female, age 85, both hemispheres 252.9
2373 Male, age 61, both hemispheres 172.0
2088 Male, age 76, both hemispheres 170.9
Dorsal motor vagal complex
nTPM: 138.3
2133 Female, age 91, both hemispheres 339.4
2000 Male, age 74, unknown 222.5
2185 Male, age 76, both hemispheres 116.3
2813 Female, age 72, unknown 99.0
2844 Male, age 55, unknown 89.2
2643 Male, age 74, both hemispheres 84.5
2797 Male, age 61, both hemispheres 79.0
2807 Female, age 85, both hemispheres 76.3
Gigantocellular reticular nuclei, medullary
nTPM: 204.1
2462 Male, age 74, both hemispheres 377.9
2310 Male, age 80, both hemispheres 211.1
2022 Male, age 76, right hemisphere 206.4
1876 Female, age 85, both hemispheres 204.1
2387 Female, age 91, both hemispheres 145.6
2314 Male, age 61, both hemispheres 79.7
Gigantocellular reticular nuclei, pars
nTPM: 211.1
2168 Male, age 76, both hemispheres 286.1
2084 Female, age 85, both hemispheres 223.0
2336 Male, age 61, both hemispheres 204.8
2330 Male, age 80, both hemispheres 174.6
2706 Male, age 80, both hemispheres 167.1
Inferior olive
nTPM: 69.6
2628 Female, age 91, both hemispheres 112.7
2085 Female, age 85, both hemispheres 75.9
2563 Male, age 74, both hemispheres 64.3
2178 Male, age 61, both hemispheres 47.7
2379 Male, age 80, both hemispheres 47.3
Lateral medullary reticular nucleus
nTPM: 133.2
2044 Male, age 76, both hemispheres 252.6
2804 Female, age 91, both hemispheres 123.1
2190 Female, age 85, both hemispheres 121.8
2305 Male, age 74, both hemispheres 113.5
2852 Male, age 80, both hemispheres 105.6
2374 Male, age 61, both hemispheres 82.6
Medial olivary nucleus
nTPM: 71.4
2851 Male, age 80, both hemispheres 113.2
1962 Male, age 76, both hemispheres 76.3
2138 Female, age 91, both hemispheres 49.2
1943 Male, age 61, both hemispheres 46.8
Medial vestibular nucleus
nTPM: 289.5
2134 Male, age 76, both hemispheres 354.5
2624 Male, age 61, both hemispheres 344.3
2093 Male, age 80, both hemispheres 309.0
2803 Female, age 91, both hemispheres 278.7
2801 Male, age 74, both hemispheres 248.9
2743 Female, age 85, both hemispheres 201.8
Motor hypoglossal nucleus
nTPM: 248.6
2461 Male, age 61, both hemispheres 381.1
2132 Female, age 85, both hemispheres 320.6
2125 Female, age 91, both hemispheres 306.8
2182 Male, age 80, both hemispheres 174.5
2277 Male, age 76, both hemispheres 59.8
Nucleus ambiguus
nTPM: 179.5
2096 Female, age 85, both hemispheres 286.7
2071 Male, age 76, both hemispheres 72.3
Nucleus cuneatus
nTPM: 164.6
2131 Male, age 76, both hemispheres 312.0
2100 Male, age 76, both hemispheres 307.3
2564 Male, age 74, both hemispheres 176.2
2376 Male, age 61, both hemispheres 161.0
2381 Male, age 80, both hemispheres 124.1
2562 Male, age 61, both hemispheres 123.7
2805 Female, age 91, both hemispheres 98.3
2808 Female, age 85, both hemispheres 97.5
2380 Male, age 80, both hemispheres 81.5
Nucleus gracilis
nTPM: 82.0
2627 Male, age 74, both hemispheres 100.9
2299 Female, age 85, both hemispheres 74.1
2382 Male, age 80, both hemispheres 71.1
Nucleus raphe obscurus
nTPM: 91.4
2800 Male, age 61, midline 116.6
2845 Female, age 85, midline 114.6
2142 Male, age 76, midline 43.2
Nucleus raphe pallidus
nTPM: 100.5
2183 Male, age 80, midline 136.9
1924 Male, age 61, midline 110.2
2145 Male, age 76, midline 54.5
Nucleus tractus solitarii
nTPM: 156.3
2144 Female, age 91, right hemisphere 255.7
2191 Female, age 85, both hemispheres 193.9
2307 Male, age 80, both hemispheres 89.2
2656 Male, age 76, both hemispheres 86.6
Parvicellular reticular nuclei
nTPM: 239.3
2558 Male, age 74, both hemispheres 321.8
2095 Male, age 76, both hemispheres 215.3
2119 Male, age 80, both hemispheres 180.8
Parvicellular reticular nuclei, medullary
nTPM: 265.8
2091 Female, age 85, both hemispheres 342.0
2189 Female, age 91, both hemispheres 279.3
2181 Male, age 80, left hemisphere 176.0
Peritrigeminal nucleus
nTPM: 216.1
2179 Male, age 61, both hemispheres 224.8
2136 Male, age 76, both hemispheres 217.3
2067 Female, age 85, both hemispheres 206.1
Prepositus hypoglossal nucleus
nTPM: 196.5
2855 Female, age 85, right hemisphere 249.0
2086 Male, age 80, both hemispheres 144.0
Spinal trigeminal nucleus, caudal
nTPM: 244.4
2390 Female, age 91, both hemispheres 528.5
2447 Male, age 76, both hemispheres 290.9
2308 Male, age 80, both hemispheres 142.9
2312 Male, age 61, both hemispheres 136.7
2642 Male, age 74, both hemispheres 123.2
Spinal trigeminal nucleus, interpolar
nTPM: 368.7
2625 Male, age 61, both hemispheres 905.8
2066 Male, age 76, right hemisphere 294.1
2033 Male, age 80, both hemispheres 225.2
2386 Female, age 85, both hemispheres 210.8
2389 Female, age 91, both hemispheres 207.7
Spinal vestibular nucleus
nTPM: 224.1
2186 Female, age 91, both hemispheres 277.0
2796 Male, age 61, both hemispheres 242.1
2780 Male, age 80, both hemispheres 241.7
2806 Female, age 85, both hemispheres 234.7
2748 Male, age 76, both hemispheres 211.7
2384 Male, age 74, both hemispheres 137.1
Superior vestibular nucleus
nTPM: 133.0
2015 Male, age 80, both hemispheres 185.3
2061 Male, age 76, both hemispheres 119.1
2383 Male, age 74, both hemispheres 94.7
Ventral medullary reticular nucleus
nTPM: 136.1
2060 Male, age 76, both hemispheres 181.8
2372 Male, age 61, both hemispheres 90.4
Ventrolateral medulla, A1-C1 cell groups
nTPM: 174.5
2741 Female, age 85, both hemispheres 258.1
1986 Male, age 76, both hemispheres 247.1
2302 Female, age 91, both hemispheres 143.9
2180 Male, age 61, both hemispheres 116.3
2118 Male, age 80, both hemispheres 106.8

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

93.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 93.4
FF:10038-101F2 18-64 years, mixed 129.9
FF:10174-103C3 60 years, female 83.3
FF:10155-103A2 76 years, female 66.9

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

224.4
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 224.5
Samples: 4

Max nTPM: 295.0
Min nTPM: 92.6
Sample A Female 236.9
Sample B Female 295.0
Sample C Male 273.3
Sample D Male 92.6

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

16.4
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 16.4
75651233 Antisense, RP_060518_01_D11, Mouse strain C57BL/6J (56 days, male) 17.8
69262346 Antisense, RP_050303_02_C04, Mouse strain C57BL/6J (56 days, male) 15.0

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