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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
318.6
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 150.2
2301
Female, age 85, both hemispheres
185.4
1984
Male, age 76, both hemispheres
169.5
2188
Female, age 91, both hemispheres
129.2
2090
Male, age 80, both hemispheres
116.7
Dorsal cochlear nucleus nTPM: 137.8
2370
Male, age 61, both hemispheres
161.5
2058
Male, age 76, both hemispheres
156.7
2802
Male, age 74, right hemisphere
130.2
2187
Female, age 91, both hemispheres
121.3
2378
Male, age 80, both hemispheres
119.1
Dorsal tegmental nucleus nTPM: 141.5
2083
Male, age 80, both hemispheres
185.7
1936
Male, age 76, left hemisphere
139.8
2358
Male, age 61, both hemispheres
127.9
2326
Male, age 74, both hemispheres
112.7
Dorsolateral tegmental area nTPM: 108.3
2654
Male, age 80, both hemispheres
170.9
2751
Female, age 85, both hemispheres
104.7
2141
Male, age 76, both hemispheres
100.1
2360
Male, age 74, both hemispheres
97.2
2337
Male, age 61, both hemispheres
68.5
Kolliker-Fuse nucleus nTPM: 251.7
2163
Male, age 80, both hemispheres
495.1
2793
Female, age 91, left hemisphere
173.6
2315
Male, age 76, right hemisphere
86.3
Lateral lemniscal nuclei nTPM: 264.9
2453
Male, age 74, right hemisphere
328.8
2169
Male, age 76, both hemispheres
303.2
2036
Male, age 80, both hemispheres
271.7
2746
Female, age 85, left hemisphere
236.4
2320
Female, age 91, left hemisphere
184.6
Lateral parabrachial nucleus nTPM: 173.7
2139
Female, age 85, right hemisphere
273.6
2790
Male, age 61, both hemispheres
199.8
2013
Male, age 80, both hemispheres
146.4
2792
Male, age 76, both hemispheres
74.9
Lateral vestibular nucleus nTPM: 301.4
2184
Male, age 76, both hemispheres
432.9
2311
Male, age 80, both hemispheres
169.9
Locus coeruleus nTPM: 116.2
2123
Female, age 91, both hemispheres
151.5
2720
Male, age 74, both hemispheres
141.4
2162
Male, age 80, both hemispheres
124.5
2317
Female, age 72, unknown
106.7
2014
Male, age 55, unknown
103.4
2788
Male, age 74, unknown
100.2
1980
Male, age 76, both hemispheres
85.7
Medial parabrachial nucleus nTPM: 171.4
2156
Male, age 61, both hemispheres
296.5
2854
Male, age 80, both hemispheres
208.9
2786
Male, age 76, both hemispheres
155.9
2170
Female, age 91, both hemispheres
121.6
2463
Female, age 85, right hemisphere
74.2
Medial periolivary nuclei nTPM: 253.1
2171
Female, age 85, both hemispheres
420.8
2063
Male, age 76, both hemispheres
308.1
2791
Male, age 74, right hemisphere
225.2
2458
Female, age 91, both hemispheres
171.8
2081
Male, age 80, both hemispheres
139.5
Motor facial nucleus nTPM: 252.0
2062
Male, age 76, both hemispheres
328.9
2365
Male, age 74, right hemisphere
290.8
2697
Female, age 85, both hemispheres
253.2
2327
Male, age 80, both hemispheres
251.7
2126
Male, age 61, both hemispheres
209.3
2795
Female, age 91, both hemispheres
178.0
Motor trigeminal nucleus nTPM: 198.9
2079
Male, age 80, both hemispheres
241.3
2560
Male, age 74, both hemispheres
226.5
2335
Male, age 61, both hemispheres
191.7
2309
Male, age 76, both hemispheres
183.9
2321
Female, age 91, both hemispheres
151.2
Nuclei of the trapezoid body nTPM: 301.2
2159
Male, age 61, both hemispheres
434.2
2735
Female, age 85, both hemispheres
376.7
1983
Male, age 76, both hemispheres
296.8
2166
Male, age 80, both hemispheres
214.5
2368
Female, age 91, both hemispheres
183.9
Nucleus raphe magnus nTPM: 318.6
2160
Male, age 61, both hemispheres
458.5
2172
Female, age 85, both hemispheres
444.6
2455
Male, age 74, both hemispheres
347.8
2328
Male, age 80, both hemispheres
240.4
2051
Male, age 76, both hemispheres
225.2
2459
Female, age 91, both hemispheres
195.5
Paramedian reticular nucleus nTPM: 220.8
2050
Female, age 85, both hemispheres
297.4
2057
Male, age 80, both hemispheres
239.4
2313
Male, age 61, both hemispheres
212.4
2052
Male, age 76, both hemispheres
134.2
Pedunculopontine tegmental nucleus nTPM: 132.6
2334
Male, age 80, both hemispheres
145.7
2338
Male, age 61, both hemispheres
137.4
1921
Female, age 85, both hemispheres
114.7
Pontine nuclei nTPM: 285.4
2787
Female, age 85, both hemispheres
443.9
2727
Male, age 61, right hemisphere
407.0
1863
Male, age 55, unknown
316.2
1968
Male, age 76, left hemisphere
299.7
2109
Female, age 72, unknown
249.2
2454
Male, age 74, left hemisphere
240.9
2115
Male, age 80, left hemisphere
183.2
2319
Female, age 91, both hemispheres
143.1
Pontine raphe nucleus nTPM: 179.6
2122
Female, age 85, midline
277.2
2853
Male, age 76, midline
81.9
Posteroventral cochlear nucleus nTPM: 159.4
2752
Female, age 85, both hemispheres
252.1
2371
Male, age 61, both hemispheres
171.0
2070
Male, age 76, both hemispheres
169.4
2341
Male, age 80, both hemispheres
129.7
2135
Female, age 91, both hemispheres
74.7
Principal sensory trigeminal nucleus nTPM: 290.8
2158
Male, age 61, both hemispheres
384.3
2324
Male, age 76, both hemispheres
362.3
2008
Male, age 80, left hemisphere
253.2
2367
Female, age 91, left hemisphere
163.4
Reticular pontine nucleus, caudal nTPM: 199.6
2332
Male, age 80, right hemisphere
288.8
2092
Male, age 76, both hemispheres
212.7
2457
Female, age 91, both hemispheres
149.8
2559
Male, age 74, both hemispheres
147.2
Reticular pontine nucleus, oral nTPM: 170.6
2361
Male, age 74, both hemispheres
269.0
2012
Female, age 85, both hemispheres
210.7
2366
Female, age 91, both hemispheres
153.1
1939
Male, age 80, both hemispheres
117.5
2167
Male, age 76, both hemispheres
103.0
Reticulotegmental nucleus nTPM: 195.5
2322
Female, age 91, both hemispheres
201.2
2333
Male, age 80, both hemispheres
200.0
2325
Male, age 76, both hemispheres
191.3
2452
Male, age 74, both hemispheres
189.5
Spinal trigeminal nucleus, oral nTPM: 289.0
2164
Male, age 80, both hemispheres
376.6
2737
Female, age 85, both hemispheres
338.1
1978
Male, age 76, both hemispheres
152.4
Subcoeruleus area nTPM: 162.9
1958
Male, age 80, both hemispheres
217.9
2089
Male, age 76, left hemisphere
208.5
2323
Female, age 91, left hemisphere
185.7
2451
Male, age 74, both hemispheres
123.1
2369
Female, age 85, left hemisphere
79.2
Superior olive nTPM: 229.4
1875
Female, age 85, both hemispheres
312.3
2329
Male, age 80, right hemisphere
226.6
2364
Male, age 74, right hemisphere
223.2
2561
Female, age 91, both hemispheres
198.4
2020
Male, age 76, both hemispheres
186.2
Ventral periolivary nuclei nTPM: 263.3
2130
Female, age 85, both hemispheres
366.9
2165
Male, age 80, both hemispheres
292.2
2794
Female, age 91, left hemisphere
233.3
2023
Male, age 76, both hemispheres
160.7
Ventrolateral tegmental area, A5 NE cell group nTPM: 205.2
2449
Male, age 74, both hemispheres
313.8
2840
Female, age 85, both hemispheres
283.2
1959
Male, age 76, both hemispheres
210.1
2161
Male, age 80, both hemispheres
187.1
2456
Female, age 91, both hemispheres
143.1
2359
Male, age 61, both hemispheres
93.5
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
235.5
Pig sample
Sample description
nTPM
Pons nTPM: 235.5
Samples: 4
Max nTPM: 410.7
Min nTPM: 135.3
Sample A
Female
208.6
Sample B
Female
135.3
Sample C
Male
187.3
Sample D
Male
410.7
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
