We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
SLC39A5
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • SLC39A5
TISSUE SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:212.8 nTPM
HPA:212.8 nTPM
GTEx:86.5 nTPM
FANTOM5:259.2 Scaled Tags Per Million

SMALL INTESTINE - Annotated protein expression
Pending normal tissue analysis

SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

212.8
overview
Male, age 65
Small intestine sample 232
nTPM: 246.1
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 262
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 147.9
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 195.2

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

86.5
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 86.5
Samples: 187

Max nTPM: 363.2
Min nTPM: 0.2
Std nTPM: 88.7
Median nTPM: 54.0
GTEX-111YS-1426-SM-5GID8 60-69 years, male 363.2
GTEX-YFCO-1326-SM-664NV 40-49 years, male 294.4
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 283.7
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 272.1
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 270.8
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 270.0
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 268.7
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 266.4
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 262.8
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 258.3
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 258.3
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 251.4
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 243.5
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 242.3
GTEX-14PN3-2026-SM-68729 60-69 years, female 241.6
GTEX-1122O-1326-SM-5H11F 60-69 years, female 240.1
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 234.5
GTEX-ZTSS-0926-SM-59865 40-49 years, male 233.8
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 233.5
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 222.0
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 219.2
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 219.2
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 218.8
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 209.4
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 207.1
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 202.8
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 202.7
GTEX-13113-1226-SM-5EGHT 60-69 years, female 201.7
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 196.9
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 195.3
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 194.6
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 193.4
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 193.2
GTEX-144GM-1026-SM-79OKU 20-29 years, male 191.3
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 190.1
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 186.8
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 185.1
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 183.6
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 182.1
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 182.0
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 178.6
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 176.2
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 166.4
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 164.9
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 163.8
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 159.1
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 151.7
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 147.2
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 141.2
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 139.4
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 137.6
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 136.5
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 135.8
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 132.9
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 131.1
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 129.8
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 125.5
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 124.7
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 117.8
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 112.5
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 112.1
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 112.1
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 110.6
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 107.5
GTEX-14PKU-1626-SM-6871C 40-49 years, female 106.2
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 106.1
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 104.6
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 102.9
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 101.8
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 99.1
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 98.5
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 96.5
GTEX-14PK6-1626-SM-6871I 70-79 years, female 94.6
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 93.0
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 91.5
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 88.4
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 86.5
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 86.2
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 86.1
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 80.8
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 79.5
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 77.5
GTEX-1C475-1426-SM-793CH 40-49 years, female 74.1
GTEX-13O61-1326-SM-5KM31 60-69 years, male 69.7
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 69.0
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 68.8
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 68.3
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 67.1
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 66.4
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 64.2
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 63.7
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 63.4
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 59.0
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 54.0
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 51.5
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 51.3
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 50.0
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 47.3
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 46.1
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 44.9
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 44.0
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 41.4
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 40.7
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 39.7
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 38.6
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 31.2
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 29.4
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 28.5
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 28.5
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 27.7
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 27.7
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 25.7
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 25.6
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 23.4
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 22.0
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 21.2
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 21.1
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 21.0
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 20.4
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 20.1
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 19.6
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 19.1
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 17.9
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 17.6
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 17.6
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 16.7
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 14.3
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 13.5
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 12.7
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 12.7
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 12.6
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 10.8
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 10.6
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 9.9
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 9.9
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 9.9
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 9.1
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 8.3
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 7.9
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 7.8
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 6.9
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 6.8
GTEX-183FY-1626-SM-793D8 20-29 years, male 6.0
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 5.0
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 4.8
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 4.6
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 4.6
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 4.3
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 4.3
GTEX-13111-1426-SM-5DUW3 50-59 years, male 4.1
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 3.9
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 3.8
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 3.2
GTEX-117YX-0326-SM-5GICL 50-59 years, male 2.9
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 2.9
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 2.9
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 2.7
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 2.6
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 2.5
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 2.5
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 2.3
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 2.2
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 2.1
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 2.0
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 1.9
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 1.6
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 1.5
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 1.4
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 1.3
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 1.3
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 1.3
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 1.0
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 0.9
GTEX-1192X-2526-SM-59868 50-59 years, male 0.8
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 0.8
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 0.8
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 0.7
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 0.5
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 0.4
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 0.4
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 0.4
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 0.3
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 0.2
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 0.2
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 0.2
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 0.2
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 0.2
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

259.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 259.2
FF:10024-101D6 15,40,85 years, mixed 259.2

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org