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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:521.0 nTPM
HPA:521.0 nTPM
GTEx:283.3 nTPM
FANTOM5:1627.1 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA017378
Glandular cells High


SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

521.0
overview
Male, age 65
Small intestine sample 232
nTPM: 513.4
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 639.5
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 446
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 485.1

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

283.3
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 283.3
Samples: 187

Max nTPM: 862.9
Min nTPM: 123.1
Std nTPM: 141.4
Median nTPM: 226.8
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 862.9
GTEX-111YS-1426-SM-5GID8 60-69 years, male 708.5
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 652.4
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 650.3
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 637.3
GTEX-YFCO-1326-SM-664NV 40-49 years, male 623.4
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 622.0
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 610.5
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 575.4
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 573.1
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 563.6
GTEX-ZTSS-0926-SM-59865 40-49 years, male 558.4
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 548.7
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 542.1
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 527.1
GTEX-1122O-1326-SM-5H11F 60-69 years, female 522.5
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 506.6
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 505.2
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 500.0
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 495.8
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 493.8
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 482.0
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 481.8
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 478.6
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 467.8
GTEX-14PN3-2026-SM-68729 60-69 years, female 457.6
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 450.1
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 447.4
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 443.9
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 434.1
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 432.9
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 429.9
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 426.9
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 419.0
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 416.9
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 391.8
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 391.8
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 386.6
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 386.4
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 385.6
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 385.4
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 383.8
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 376.5
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 375.0
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 373.7
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 371.6
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 366.6
GTEX-13113-1226-SM-5EGHT 60-69 years, female 365.1
GTEX-144GM-1026-SM-79OKU 20-29 years, male 363.7
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 359.3
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 354.6
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 344.0
GTEX-14PK6-1626-SM-6871I 70-79 years, female 342.3
GTEX-14PKU-1626-SM-6871C 40-49 years, female 339.5
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 336.0
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 334.1
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 324.4
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 323.5
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 316.9
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 314.0
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 306.3
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 303.5
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 300.5
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 296.6
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 296.1
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 293.0
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 287.0
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 286.2
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 285.2
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 284.7
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 283.9
GTEX-1C475-1426-SM-793CH 40-49 years, female 278.6
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 278.6
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 267.6
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 264.0
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 263.6
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 258.5
GTEX-13O61-1326-SM-5KM31 60-69 years, male 257.4
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 256.2
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 255.0
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 250.8
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 250.0
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 247.5
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 243.2
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 241.9
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 241.7
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 236.6
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 236.0
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 235.8
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 235.4
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 234.0
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 231.2
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 231.2
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 226.8
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 225.3
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 221.5
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 219.8
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 218.3
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 214.6
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 214.5
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 213.9
GTEX-117YX-0326-SM-5GICL 50-59 years, male 213.8
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 212.8
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 210.8
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 209.3
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 205.9
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 203.5
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 203.3
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 202.8
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 202.8
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 202.0
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 201.2
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 200.0
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 199.1
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 198.9
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 198.3
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 194.5
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 194.5
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 193.9
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 191.7
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 191.4
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 191.2
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 191.0
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 189.3
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 189.1
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 188.1
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 187.9
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 187.9
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 187.6
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 187.4
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 184.9
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 184.5
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 184.3
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 184.0
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 183.2
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 183.1
GTEX-183FY-1626-SM-793D8 20-29 years, male 182.8
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 181.8
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 179.8
GTEX-1192X-2526-SM-59868 50-59 years, male 179.3
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 178.8
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 178.5
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 175.7
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 175.5
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 175.5
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 174.8
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 172.9
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 172.7
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 171.1
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 171.1
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 171.1
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 170.3
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 169.6
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 168.8
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 167.0
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 166.7
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 166.4
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 165.5
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 165.0
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 163.4
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 162.6
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 162.2
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 161.5
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 160.9
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 160.2
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 159.6
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 158.8
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 158.6
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 158.1
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 156.0
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 155.8
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 153.7
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 153.4
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 152.6
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 148.8
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 148.5
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 146.8
GTEX-13111-1426-SM-5DUW3 50-59 years, male 140.1
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 140.1
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 139.6
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 138.4
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 135.9
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 133.6
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 128.3
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 124.4
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 123.9
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 123.1
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1627.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 1627.1
FF:10024-101D6 15,40,85 years, mixed 1627.1

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