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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:299.8 nTPM
HPA Brain:433.5 nTPM
GTEx:299.8 nTPM
FANTOM5:630.4 Scaled Tags Per Million
Pig:351.1 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

433.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 417.3
1981 Female, age 72, midline 474.0
2048 Male, age 55, midline 438.6
2565 Male, age 75, midline 416.2
2816 Male, age 47, midline 389.1
2194 Female, age 79, both hemispheres 368.3
Cervical spinal cord, dorsal horn
nTPM: 433.5
2296 Male, age 66, both hemispheres 518.0
2173 Female, age 72, unknown 512.6
2069 Male, age 47, both hemispheres 465.6
2297 Male, age 75, both hemispheres 369.8
1877 Male, age 55, unknown 369.4
2721 Male, age 90, both hemispheres 365.8
Cervical spinal cord, ventral horn
nTPM: 416.2
2098 Female, age 72, unknown 537.4
2809 Male, age 90, both hemispheres 447.8
2480 Male, age 75, both hemispheres 415.2
2295 Male, age 66, both hemispheres 409.0
2068 Male, age 55, unknown 344.0
2820 Female, age 79, both hemispheres 343.9

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

299.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 299.8
Samples: 159

Max nTPM: 438.0
Min nTPM: 161.4
Std nTPM: 56.5
Median nTPM: 301.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 438.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 429.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 427.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 414.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 413.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 408.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 407.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 403.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 403.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 400.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 385.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 377.0
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 375.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 375.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 373.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 373.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 372.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 371.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 369.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 368.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 367.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 360.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 360.2
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 359.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 358.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 358.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 356.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 355.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 354.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 353.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 353.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 351.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 350.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 349.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 345.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 344.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 342.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 341.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 339.6
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 339.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 339.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 338.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 336.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 335.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 334.1
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 331.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 330.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 326.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 326.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 325.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 323.8
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 321.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 321.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 319.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 318.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 318.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 318.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 317.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 315.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 315.3
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 313.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 313.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 313.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 311.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 311.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 311.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 311.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 309.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 308.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 308.4
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 308.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 308.3
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 307.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 307.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 304.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 303.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 302.8
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 301.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 301.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 301.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 300.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 299.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 298.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 296.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 296.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 295.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 295.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 294.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 294.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 291.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 288.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 287.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 287.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 286.3
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 284.5
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 284.2
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 281.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 281.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 279.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 279.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 278.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 276.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 275.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 273.6
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 272.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 271.4
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 270.7
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 269.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 269.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 268.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 266.0
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 266.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 265.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 264.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 261.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 261.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 261.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 260.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 259.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 259.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 257.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 256.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 255.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 255.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 254.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 254.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 251.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 249.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 248.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 246.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 245.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 245.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 245.0
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 241.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 240.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 240.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 240.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 239.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 239.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 237.3
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 237.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 235.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 235.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 233.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 231.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 226.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 223.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 221.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 220.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 218.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 214.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 213.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 198.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 194.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 184.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 180.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 177.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 167.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 161.4
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

630.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 630.4
FF:10159-103A6 76 years, female 752.2
FF:10181-103D1 60 years, female 508.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

351.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 311.7
Samples: 4

Max nTPM: 334.6
Min nTPM: 288.3
Sample A Female 288.3
Sample B Female 334.6
Sample C Male 325.5
Sample D Male 298.4
Ventral spinal cord
nTPM: 351.1
Samples: 4

Max nTPM: 368.5
Min nTPM: 331.4
Sample A Female 352.1
Sample B Female 352.4
Sample C Male 331.4
Sample D Male 368.5

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