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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:545.5 nTPM
FANTOM5:256.5 Scaled Tags Per Million
Pig:167.3 nTPM
Allen mouse:13.5 Expression energy

MEDULLA OBLONGATA - Annotated protein expression
Pending normal tissue analysis

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

545.5
Sample id Sample description nTPM
Area postrema
nTPM: 444.7
2306 Male, age 80, both hemispheres 556.8
2799 Male, age 61, both hemispheres 493.4
2054 Male, age 76, both hemispheres 284.0
Dorsal medullary reticular nucleus
nTPM: 403.0
2088 Male, age 76, both hemispheres 434.7
2373 Male, age 61, both hemispheres 402.0
2040 Female, age 85, both hemispheres 372.3
Dorsal motor vagal complex
nTPM: 345.4
2185 Male, age 76, both hemispheres 574.9
2797 Male, age 61, both hemispheres 491.3
2807 Female, age 85, both hemispheres 353.8
2643 Male, age 74, both hemispheres 299.3
2000 Male, age 74, unknown 289.2
2133 Female, age 91, both hemispheres 285.3
2813 Female, age 72, unknown 263.1
2844 Male, age 55, unknown 206.4
Gigantocellular reticular nuclei, medullary
nTPM: 418.6
2314 Male, age 61, both hemispheres 535.7
2387 Female, age 91, both hemispheres 520.9
1876 Female, age 85, both hemispheres 441.7
2022 Male, age 76, right hemisphere 397.8
2310 Male, age 80, both hemispheres 374.8
2462 Male, age 74, both hemispheres 240.8
Gigantocellular reticular nuclei, pars
nTPM: 344.6
2336 Male, age 61, both hemispheres 387.2
2330 Male, age 80, both hemispheres 382.5
2706 Male, age 80, both hemispheres 378.0
2084 Female, age 85, both hemispheres 328.0
2168 Male, age 76, both hemispheres 247.3
Inferior olive
nTPM: 410.3
2178 Male, age 61, both hemispheres 484.9
2628 Female, age 91, both hemispheres 444.5
2379 Male, age 80, both hemispheres 430.3
2085 Female, age 85, both hemispheres 370.7
2563 Male, age 74, both hemispheres 321.0
Lateral medullary reticular nucleus
nTPM: 431.9
2852 Male, age 80, both hemispheres 486.0
2374 Male, age 61, both hemispheres 457.0
2190 Female, age 85, both hemispheres 438.4
2305 Male, age 74, both hemispheres 422.4
2804 Female, age 91, both hemispheres 396.7
2044 Male, age 76, both hemispheres 390.7
Medial olivary nucleus
nTPM: 541.6
1943 Male, age 61, both hemispheres 644.5
1962 Male, age 76, both hemispheres 582.9
2851 Male, age 80, both hemispheres 472.4
2138 Female, age 91, both hemispheres 466.8
Medial vestibular nucleus
nTPM: 351.7
2803 Female, age 91, both hemispheres 478.5
2624 Male, age 61, both hemispheres 409.7
2093 Male, age 80, both hemispheres 392.2
2801 Male, age 74, both hemispheres 375.1
2743 Female, age 85, both hemispheres 258.6
2134 Male, age 76, both hemispheres 196.2
Motor hypoglossal nucleus
nTPM: 357.1
2132 Female, age 85, both hemispheres 440.2
2182 Male, age 80, both hemispheres 420.5
2125 Female, age 91, both hemispheres 413.2
2461 Male, age 61, both hemispheres 293.4
2277 Male, age 76, both hemispheres 218.2
Nucleus ambiguus
nTPM: 399.3
2071 Male, age 76, both hemispheres 564.7
2096 Female, age 85, both hemispheres 233.8
Nucleus cuneatus
nTPM: 451.0
2380 Male, age 80, both hemispheres 642.1
2808 Female, age 85, both hemispheres 563.1
2381 Male, age 80, both hemispheres 515.6
2376 Male, age 61, both hemispheres 462.7
2100 Male, age 76, both hemispheres 440.9
2805 Female, age 91, both hemispheres 426.9
2131 Male, age 76, both hemispheres 345.8
2562 Male, age 61, both hemispheres 339.0
2564 Male, age 74, both hemispheres 323.2
Nucleus gracilis
nTPM: 537.3
2382 Male, age 80, both hemispheres 722.4
2299 Female, age 85, both hemispheres 503.7
2627 Male, age 74, both hemispheres 385.9
Nucleus raphe obscurus
nTPM: 545.5
2845 Female, age 85, midline 595.0
2142 Male, age 76, midline 575.6
2800 Male, age 61, midline 465.9
Nucleus raphe pallidus
nTPM: 519.2
2145 Male, age 76, midline 651.6
1924 Male, age 61, midline 513.3
2183 Male, age 80, midline 392.8
Nucleus tractus solitarii
nTPM: 231.5
2656 Male, age 76, both hemispheres 273.0
2144 Female, age 91, right hemisphere 249.5
2191 Female, age 85, both hemispheres 204.4
2307 Male, age 80, both hemispheres 199.2
Parvicellular reticular nuclei
nTPM: 376.6
2095 Male, age 76, both hemispheres 419.3
2119 Male, age 80, both hemispheres 396.1
2558 Male, age 74, both hemispheres 314.4
Parvicellular reticular nuclei, medullary
nTPM: 330.8
2189 Female, age 91, both hemispheres 358.8
2181 Male, age 80, left hemisphere 332.5
2091 Female, age 85, both hemispheres 301.2
Peritrigeminal nucleus
nTPM: 380.5
2136 Male, age 76, both hemispheres 404.4
2067 Female, age 85, both hemispheres 371.2
2179 Male, age 61, both hemispheres 365.9
Prepositus hypoglossal nucleus
nTPM: 320.5
2855 Female, age 85, right hemisphere 424.0
2086 Male, age 80, both hemispheres 217.0
Spinal trigeminal nucleus, caudal
nTPM: 398.5
2312 Male, age 61, both hemispheres 500.9
2308 Male, age 80, both hemispheres 416.8
2447 Male, age 76, both hemispheres 388.7
2390 Female, age 91, both hemispheres 367.0
2642 Male, age 74, both hemispheres 319.3
Spinal trigeminal nucleus, interpolar
nTPM: 334.7
2389 Female, age 91, both hemispheres 389.6
2386 Female, age 85, both hemispheres 365.9
2033 Male, age 80, both hemispheres 346.3
2625 Male, age 61, both hemispheres 286.2
2066 Male, age 76, right hemisphere 285.4
Spinal vestibular nucleus
nTPM: 416.2
2748 Male, age 76, both hemispheres 494.5
2806 Female, age 85, both hemispheres 454.3
2384 Male, age 74, both hemispheres 448.0
2186 Female, age 91, both hemispheres 392.2
2796 Male, age 61, both hemispheres 389.5
2780 Male, age 80, both hemispheres 318.8
Superior vestibular nucleus
nTPM: 294.3
2015 Male, age 80, both hemispheres 355.3
2061 Male, age 76, both hemispheres 265.3
2383 Male, age 74, both hemispheres 262.4
Ventral medullary reticular nucleus
nTPM: 472.2
2372 Male, age 61, both hemispheres 479.8
2060 Male, age 76, both hemispheres 464.7
Ventrolateral medulla, A1-C1 cell groups
nTPM: 397.3
2118 Male, age 80, both hemispheres 488.2
2180 Male, age 61, both hemispheres 416.2
2302 Female, age 91, both hemispheres 380.4
1986 Male, age 76, both hemispheres 362.6
2741 Female, age 85, both hemispheres 339.4

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

256.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 256.5
FF:10038-101F2 18-64 years, mixed 344.1
FF:10155-103A2 76 years, female 249.4
FF:10174-103C3 60 years, female 176.0

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

167.3
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 167.3
Samples: 4

Max nTPM: 209.8
Min nTPM: 132.0
Sample A Female 158.6
Sample B Female 132.0
Sample C Male 168.7
Sample D Male 209.8

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

13.5
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 13.5
68080699 Antisense, RP_040929_01_F07, Mouse strain C57BL/6J (56 days, male) 13.5

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