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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:344.4 nTPM
HPA Brain:406.9 nTPM
GTEx:344.4 nTPM
FANTOM5:269.1 Scaled Tags Per Million
Pig:187.4 nTPM

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

406.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 318.9
2048 Male, age 55, midline 363.0
1981 Female, age 72, midline 359.3
2816 Male, age 47, midline 332.6
2194 Female, age 79, both hemispheres 288.4
2565 Male, age 75, midline 251.4
Cervical spinal cord, dorsal horn
nTPM: 372.4
2296 Male, age 66, both hemispheres 545.8
2173 Female, age 72, unknown 498.6
1877 Male, age 55, unknown 355.8
2069 Male, age 47, both hemispheres 346.3
2297 Male, age 75, both hemispheres 254.9
2721 Male, age 90, both hemispheres 233.2
Cervical spinal cord, ventral horn
nTPM: 406.9
2480 Male, age 75, both hemispheres 456.6
2809 Male, age 90, both hemispheres 426.1
2098 Female, age 72, unknown 414.4
2068 Male, age 55, unknown 404.5
2295 Male, age 66, both hemispheres 396.7
2820 Female, age 79, both hemispheres 343.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

344.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 344.4
Samples: 159

Max nTPM: 801.2
Min nTPM: 71.2
Std nTPM: 121.4
Median nTPM: 335.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 801.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 691.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 662.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 624.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 583.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 580.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 573.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 572.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 569.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 531.9
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 529.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 509.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 493.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 492.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 487.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 487.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 479.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 472.0
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 471.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 467.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 467.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 465.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 462.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 460.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 458.6
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 456.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 455.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 449.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 445.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 443.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 442.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 441.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 441.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 439.7
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 439.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 438.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 438.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 436.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 430.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 423.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 421.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 419.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 412.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 411.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 408.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 407.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 407.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 406.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 406.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 392.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 390.5
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 390.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 390.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 388.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 386.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 384.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 384.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 381.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 380.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 380.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 375.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 374.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 370.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 366.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 366.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 365.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 365.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 364.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 363.1
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 362.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 360.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 357.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 356.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 354.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 352.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 349.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 344.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 342.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 339.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 335.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 335.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 335.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 334.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 331.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 330.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 329.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 328.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 324.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 323.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 320.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 319.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 315.6
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 315.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 314.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 314.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 308.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 308.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 307.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 304.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 303.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 300.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 300.3
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 299.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 294.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 293.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 291.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 288.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 286.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 285.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 285.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 282.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 279.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 277.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 274.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 270.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 269.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 264.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 261.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 260.9
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 260.4
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 255.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 254.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 253.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 249.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 245.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 244.5
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 241.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 240.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 234.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 231.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 227.2
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 223.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 223.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 210.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 209.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 206.2
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 203.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 199.9
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 199.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 198.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 195.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 194.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 194.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 182.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 182.0
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 182.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 177.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 165.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 164.5
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 163.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 160.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 159.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 157.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 155.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 146.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 145.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 130.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 107.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 71.2
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

269.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 269.1
FF:10181-103D1 60 years, female 277.4
FF:10159-103A6 76 years, female 260.7

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

187.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 157.7
Samples: 4

Max nTPM: 185.7
Min nTPM: 116.5
Sample A Female 145.5
Sample B Female 183.0
Sample C Male 116.5
Sample D Male 185.7
Ventral spinal cord
nTPM: 187.4
Samples: 4

Max nTPM: 241.3
Min nTPM: 144.6
Sample A Female 164.9
Sample B Female 198.9
Sample C Male 144.6
Sample D Male 241.3

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