MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:45.1 nTPM
HPA Brain:85.6 nTPM
GTEx:45.1 nTPM
FANTOM5:53.8 Scaled Tags Per Million
Pig:57.8 nTPM
Mouse:62.6 nTPM
Allen mouse:2.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 85.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 62.6
2666 Male, age 74, left hemisphere 95.7
2019 Male, age 18, unknown 78.7
2586 Male, age 75, left hemisphere 77.3
1827 Male, age 72, unknown 61.4
1833 Male, age 53, unknown 54.8
2411 Female, age 72, unknown 54.6
1870 Female, age 42, unknown 53.7
2828 Female, age 72, unknown 52.7
1830 Male, age 51, unknown 50.8
2219 Male, age 76, both hemispheres 46.1
Dorsal raphe nucleus
nTPM: 65.9
1828 Male, age 53, unknown 70.6
2047 Male, age 72, unknown 68.9
2750 Male, age 76, both hemispheres 66.7
2298 Female, age 72, unknown 66.3
2016 Female, age 72, unknown 56.8
Inferior colliculus
nTPM: 52.4
1890 Male, age 53, unknown 53.3
2097 Female, age 72, unknown 52.7
2849 Male, age 72, unknown 52.3
1848 Female, age 42, unknown 51.5
Median raphe nucleus
nTPM: 85.6
2220 Male, age 76, midline 85.6
Periaquaductal grey, anterior
nTPM: 61.4
1795 Male, age 51, unknown 63.5
1947 Male, age 18, unknown 62.7
2502 Female, age 75, unknown 58.1
Periaquaductal grey, dorsal
nTPM: 58.4
2850 Male, age 76, both hemispheres 77.6
1831 Male, age 72, unknown 62.1
1840 Male, age 53, unknown 47.8
2464 Female, age 72, unknown 46.3
Periaquaductal grey, lateral
nTPM: 66.3
2272 Male, age 74, both hemispheres 72.1
2140 Male, age 76, both hemispheres 71.8
2053 Male, age 18, unknown 55.1
Pretectal area
nTPM: 65.3
1817 Female, age 42, unknown 82.9
2007 Male, age 72, unknown 82.6
1816 Male, age 51, unknown 79.1
1944 Female, age 72, unknown 77.7
1815 Male, age 53, unknown 72.3
2224 Female, age 72, unknown 60.0
2407 Male, age 75, both hemispheres 57.1
2667 Female, age 75, unknown 55.5
2825 Male, age 18, unknown 54.0
2273 Male, age 74, both hemispheres 52.1
2316 Male, age 76, right hemisphere 44.6
Red nucleus
nTPM: 57.0
1821 Female, age 72, unknown 68.5
2785 Male, age 18, unknown 64.8
2725 Female, age 75, unknown 62.8
1865 Male, age 51, unknown 60.2
2584 Male, age 75, left hemisphere 58.8
2588 Male, age 74, left hemisphere 57.1
2769 Male, age 72, unknown 53.7
1954 Female, age 42, unknown 53.5
2823 Male, age 76, right hemisphere 52.1
1904 Male, age 53, unknown 51.2
2503 Female, age 72, unknown 50.9
2227 Male, age 72, unknown 50.6
Substantia nigra
nTPM: 84.0
1916 Female, age 42, unknown 119.6
1941 Male, age 53, unknown 101.8
1851 Male, age 51, unknown 90.4
2241 Male, age 72, unknown 80.0
2665 Male, age 74, both hemispheres 78.5
2409 Female, age 72, unknown 78.2
2583 Male, age 75, right hemisphere 78.1
1889 Female, age 72, unknown 77.4
2699 Male, age 18, unknown 72.0
2590 Female, age 75, unknown 64.4
Superior colliculus
nTPM: 56.7
2668 Female, age 75, unknown 79.3
2087 Female, age 72, unknown 64.1
2261 Male, age 18, unknown 60.7
1796 Male, age 53, unknown 57.4
2587 Male, age 74, left hemisphere 57.0
1839 Male, age 51, unknown 51.1
1913 Female, age 42, unknown 51.1
2664 Male, age 75, both hemispheres 50.5
1895 Male, age 76, right hemisphere 49.4
1995 Male, age 72, unknown 46.4
Ventral tegmental area
nTPM: 69.3
2218 Male, age 76, both hemispheres 81.7
1915 Female, age 42, unknown 79.8
2410 Female, age 72, unknown 75.7
2021 Male, age 53, unknown 64.8
1942 Male, age 51, unknown 60.7
2223 Female, age 72, unknown 53.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 45.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 45.1
Samples: 139

Max nTPM: 176.8
Min nTPM: 14.6
Std nTPM: 24.9
Median nTPM: 38.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 176.8
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 143.7
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 124.8
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 108.9
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 103.3
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 95.3
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 91.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 90.4
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 90.1
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 89.9
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 83.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 53.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 53.8
FF:10158-103A5 76 years, female 53.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 57.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 47.0
Samples: 4

Max nTPM: 57.3
Min nTPM: 38.5
Sample A Female 57.3
Sample B Female 38.5
Sample C Male 52.5
Sample D Male 39.5
Midbrain
nTPM: 51.3
Samples: 4

Max nTPM: 66.8
Min nTPM: 40.7
Sample A Female 54.7
Sample B Female 40.7
Sample C Male 66.8
Sample D Male 43.1
Periaqueductal gray
nTPM: 39.0
Samples: 3

Max nTPM: 45.7
Min nTPM: 33.8
Sample B Female 37.4
Sample C Male 45.7
Sample D Male 33.8
Superior colliculi
nTPM: 57.8
Samples: 4

Max nTPM: 81.1
Min nTPM: 40.9
Sample A Female 55.5
Sample B Female 40.9
Sample C Male 81.1
Sample D Male 53.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 62.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 62.6
Samples: 4

Max nTPM: 63.5
Min nTPM: 61.4
Sample A Male 61.4
Sample B Male 62.7
Sample C Female 63.5
Sample D Female 62.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.8
67978474 Antisense, RP_040923_01_B11, Mouse strain C57BL/6J (56 days, male) 3.0
70919722 Antisense, RP_050713_01_H11, Mouse strain C57BL/6J (56 days, male) 2.6

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