We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
TSPAN3
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • TSPAN3
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:292.1 nTPM
HPA Brain:240.9 nTPM
GTEx:292.1 nTPM
FANTOM5:241.3 Scaled Tags Per Million
Pig:160.2 nTPM
Mouse:383.0 nTPM
Allen mouse:29.1 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

240.9
Sample id Sample description nTPM
Amygdala
nTPM: 240.9
2514 Male, age 75, right hemisphere 276.8
2695 Female, age 67, right hemisphere 251.1
1987 Female, age 91, left hemisphere 239.8
2814 Male, age 76, right hemisphere 232.7
2517 Female, age 94, left hemisphere 204.0
Basal amygdala
nTPM: 192.1
2609 Male, age 75, right hemisphere 281.3
2243 Female, age 91, right hemisphere 203.8
1955 Male, age 76, both hemispheres 203.4
2110 Male, age 80, left hemisphere 194.8
2685 Female, age 94, left hemisphere 168.9
2827 Female, age 67, right hemisphere 100.4
Central amygdala
nTPM: 210.9
2515 Male, age 75, right hemisphere 283.9
1905 Male, age 76, both hemispheres 207.4
2239 Male, age 80, left hemisphere 190.5
2701 Female, age 91, right hemisphere 188.7
2826 Female, age 94, left hemisphere 183.8
Corticomedial amygdala
nTPM: 209.9
2428 Male, age 75, right hemisphere 296.5
2829 Male, age 80, left hemisphere 234.1
2242 Female, age 91, right hemisphere 219.2
2240 Male, age 76, both hemispheres 204.6
2429 Female, age 94, left hemisphere 192.9
2535 Female, age 67, right hemisphere 112.0
Lateral amygdala
nTPM: 183.0
2516 Male, age 75, right hemisphere 263.1
1883 Male, age 76, both hemispheres 207.4
2256 Male, age 80, left hemisphere 179.0
2534 Female, age 94, left hemisphere 169.0
2255 Female, age 91, right hemisphere 159.8
2830 Female, age 67, right hemisphere 119.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

292.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 292.1
Samples: 152

Max nTPM: 539.1
Min nTPM: 103.1
Std nTPM: 75.3
Median nTPM: 291.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 539.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 513.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 475.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 457.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 455.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 454.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 453.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 429.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 426.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 423.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 408.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 407.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 403.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 399.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 395.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 391.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 387.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 373.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 362.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 362.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 361.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 360.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 358.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 356.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 354.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 353.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 353.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 352.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 349.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 348.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 348.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 343.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 343.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 342.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 341.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 338.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 337.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 335.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 332.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 332.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 331.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 330.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 326.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 326.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 325.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 325.5
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 324.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 323.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 320.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 319.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 318.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 314.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 313.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 313.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 310.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 309.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 309.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 308.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 307.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 307.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 306.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 305.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 305.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 304.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 303.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 303.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 301.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 300.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 298.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 297.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 296.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 296.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 293.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 293.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 292.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 292.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 290.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 289.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 289.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 289.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 287.2
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 283.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 283.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 282.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 281.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 279.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 279.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 279.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 278.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 278.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 277.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 273.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 272.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 272.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 265.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 265.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 264.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 263.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 262.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 260.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 258.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 257.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 256.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 254.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 253.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 249.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 247.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 244.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 244.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 242.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 241.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 239.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 238.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 237.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 235.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 233.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 232.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 232.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 231.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 231.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 231.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 230.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 228.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 227.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 226.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 224.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 223.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 221.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 220.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 215.8
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 215.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 211.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 208.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 205.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 204.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 204.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 201.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 200.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 198.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 195.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 195.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 193.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 193.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 190.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 177.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 174.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 167.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 159.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 156.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 137.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 128.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 103.1
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

241.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 241.3
FF:10151-102I7 76 years, female 241.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

160.2
Pig sample Sample description nTPM
Amygdala
nTPM: 160.2
Samples: 4

Max nTPM: 207.3
Min nTPM: 138.8
Sample A Female 207.3
Sample B Female 149.0
Sample C Male 138.8
Sample D Male 145.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

383.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 383.0
Samples: 4

Max nTPM: 391.7
Min nTPM: 375.5
Sample A Male 391.7
Sample B Male 375.5
Sample C Female 383.8
Sample D Female 381.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

29.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 29.1
71489783 Antisense, RP_050512_04_E11, Mouse strain C57BL/6J (56 days, male) 29.1

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org