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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:205.1 nTPM
HPA Brain:260.7 nTPM
GTEx:205.1 nTPM
FANTOM5:267.1 Scaled Tags Per Million
Pig:270.0 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

260.7
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 243.5
1981 Female, age 72, midline 309.3
2048 Male, age 55, midline 262.1
2565 Male, age 75, midline 260.9
2816 Male, age 47, midline 196.0
2194 Female, age 79, both hemispheres 189.1
Cervical spinal cord, dorsal horn
nTPM: 260.7
2173 Female, age 72, unknown 337.6
2069 Male, age 47, both hemispheres 284.2
2296 Male, age 66, both hemispheres 283.8
2721 Male, age 90, both hemispheres 256.0
1877 Male, age 55, unknown 203.4
2297 Male, age 75, both hemispheres 199.4
Cervical spinal cord, ventral horn
nTPM: 242.6
2098 Female, age 72, unknown 348.1
2809 Male, age 90, both hemispheres 276.1
2295 Male, age 66, both hemispheres 272.9
2480 Male, age 75, both hemispheres 222.1
2068 Male, age 55, unknown 177.1
2820 Female, age 79, both hemispheres 159.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

205.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 205.1
Samples: 159

Max nTPM: 460.4
Min nTPM: 121.2
Std nTPM: 49.8
Median nTPM: 196.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 460.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 347.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 336.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 323.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 315.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 314.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 308.5
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 303.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 299.3
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 297.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 286.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 286.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 283.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 268.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 261.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 261.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 259.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 257.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 257.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 256.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 255.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 255.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 253.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 251.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 251.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 248.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 247.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 246.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 245.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 243.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 241.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 239.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 237.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 236.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 236.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 236.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 236.1
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 235.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 234.7
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 233.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 232.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 232.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 231.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 231.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 230.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 226.9
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 226.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 226.0
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 224.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 223.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 217.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 216.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 215.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 215.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 215.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 213.6
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 210.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 210.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 209.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 209.5
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 208.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 208.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 208.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 206.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 206.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 205.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 204.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 203.8
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 203.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 203.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 202.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 201.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 200.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 198.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 198.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 197.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 197.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 197.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 197.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 196.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 196.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 194.9
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 194.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 194.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 193.8
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 193.5
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 192.5
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 192.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 192.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 191.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 190.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 189.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 188.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 188.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 188.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 188.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 186.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 186.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 185.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 185.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 184.7
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 184.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 183.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 183.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 182.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 182.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 182.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 180.8
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 180.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 178.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 178.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 178.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 176.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 176.7
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 176.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 175.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 175.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 175.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 174.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 172.6
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 172.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 172.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 171.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 170.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 170.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 170.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 167.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 165.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 165.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 163.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 159.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 157.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 157.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 157.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 156.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 156.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 155.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 155.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 154.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 152.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 152.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 151.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 151.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 150.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 148.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 148.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 146.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 142.3
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 138.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 137.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 137.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 136.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 134.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 133.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 131.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 131.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 129.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 122.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 121.2
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

267.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 267.1
FF:10159-103A6 76 years, female 276.0
FF:10181-103D1 60 years, female 258.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

270.0
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 270.1
Samples: 4

Max nTPM: 319.7
Min nTPM: 242.1
Sample A Female 242.1
Sample B Female 262.5
Sample C Male 319.7
Sample D Male 255.9
Ventral spinal cord
nTPM: 265.4
Samples: 4

Max nTPM: 280.7
Min nTPM: 248.6
Sample A Female 260.5
Sample B Female 271.8
Sample C Male 280.7
Sample D Male 248.6

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