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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:191.1 nTPM
HPA Brain:101.1 nTPM
GTEx:191.1 nTPM
FANTOM5:183.8 Scaled Tags Per Million
Pig:102.5 nTPM
Mouse:270.5 nTPM
Allen mouse:19.2 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

101.1
Sample id Sample description nTPM
Amygdala
nTPM: 101.1
2814 Male, age 76, right hemisphere 117.5
2695 Female, age 67, right hemisphere 105.6
2514 Male, age 75, right hemisphere 98.2
2517 Female, age 94, left hemisphere 92.8
1987 Female, age 91, left hemisphere 91.2
Basal amygdala
nTPM: 83.0
2609 Male, age 75, right hemisphere 96.8
2243 Female, age 91, right hemisphere 89.5
1955 Male, age 76, both hemispheres 86.9
2110 Male, age 80, left hemisphere 83.2
2685 Female, age 94, left hemisphere 78.8
2827 Female, age 67, right hemisphere 62.4
Central amygdala
nTPM: 86.3
1905 Male, age 76, both hemispheres 103.1
2826 Female, age 94, left hemisphere 102.3
2515 Male, age 75, right hemisphere 81.4
2239 Male, age 80, left hemisphere 78.2
2701 Female, age 91, right hemisphere 66.5
Corticomedial amygdala
nTPM: 83.4
2829 Male, age 80, left hemisphere 94.4
2242 Female, age 91, right hemisphere 91.1
2429 Female, age 94, left hemisphere 84.0
2428 Male, age 75, right hemisphere 81.3
2240 Male, age 76, both hemispheres 81.0
2535 Female, age 67, right hemisphere 68.7
Lateral amygdala
nTPM: 82.8
1883 Male, age 76, both hemispheres 105.4
2516 Male, age 75, right hemisphere 97.1
2534 Female, age 94, left hemisphere 91.1
2830 Female, age 67, right hemisphere 69.2
2255 Female, age 91, right hemisphere 68.5
2256 Male, age 80, left hemisphere 65.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

191.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 191.1
Samples: 152

Max nTPM: 536.9
Min nTPM: 67.0
Std nTPM: 62.6
Median nTPM: 181.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 536.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 509.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 400.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 359.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 337.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 327.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 302.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 288.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 277.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 276.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 272.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 270.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 266.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 259.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 257.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 243.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 243.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 243.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 242.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 235.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 233.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 233.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 229.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 229.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 228.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 227.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 225.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 223.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 222.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 216.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 216.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 216.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 214.4
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 213.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 212.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 211.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 211.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 211.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 211.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 210.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 209.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 209.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 209.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 209.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 208.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 207.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 207.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 205.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 204.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 203.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 202.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 200.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 198.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 197.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 197.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 197.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 196.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 194.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 194.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 193.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 193.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 193.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 192.5
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 192.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 191.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 191.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 190.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 188.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 187.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 187.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 186.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 185.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 184.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 182.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 181.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 181.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 180.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 180.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 180.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 180.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 178.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 178.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 177.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 177.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 176.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 176.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 176.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 175.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 174.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 174.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 172.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 172.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 171.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 170.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 169.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 168.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 168.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 167.6
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 166.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 165.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 164.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 164.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 163.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 161.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 160.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 158.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 158.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 158.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 157.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 156.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 156.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 154.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 154.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 154.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 153.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 153.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 148.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 148.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 148.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 147.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 147.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 147.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 145.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 145.1
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 144.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 143.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 143.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 142.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 140.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 140.5
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 140.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 138.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 137.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 136.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 135.9
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 135.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 133.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 132.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 131.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 129.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 129.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 123.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 121.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 120.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 119.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 116.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 114.6
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 113.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 106.4
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 104.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 101.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 67.0
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

183.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 183.8
FF:10151-102I7 76 years, female 183.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

102.5
Pig sample Sample description nTPM
Amygdala
nTPM: 102.6
Samples: 4

Max nTPM: 146.1
Min nTPM: 82.3
Sample A Female 146.1
Sample B Female 94.1
Sample C Male 82.3
Sample D Male 87.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

270.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 270.6
Samples: 4

Max nTPM: 288.2
Min nTPM: 255.7
Sample A Male 272.9
Sample B Male 255.7
Sample C Female 288.2
Sample D Female 265.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

19.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 19.2
71608213 Antisense, RP_050927_01_B09, Mouse strain C57BL/6J (56 days, male) 19.2

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