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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:134.7 nTPM
HPA Brain:100.2 nTPM
GTEx:134.7 nTPM
FANTOM5:149.4 Scaled Tags Per Million
Pig:161.7 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

100.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 100.2
1981 Female, age 72, midline 122.3
2565 Male, age 75, midline 119.3
2194 Female, age 79, both hemispheres 90.8
2048 Male, age 55, midline 85.2
2816 Male, age 47, midline 83.4
Cervical spinal cord, dorsal horn
nTPM: 97.8
2173 Female, age 72, unknown 119.0
2069 Male, age 47, both hemispheres 102.3
2296 Male, age 66, both hemispheres 100.6
2721 Male, age 90, both hemispheres 94.1
2297 Male, age 75, both hemispheres 85.8
1877 Male, age 55, unknown 85.0
Cervical spinal cord, ventral horn
nTPM: 92.7
2098 Female, age 72, unknown 108.0
2068 Male, age 55, unknown 97.8
2480 Male, age 75, both hemispheres 95.6
2295 Male, age 66, both hemispheres 91.5
2809 Male, age 90, both hemispheres 91.1
2820 Female, age 79, both hemispheres 72.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

134.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 134.7
Samples: 159

Max nTPM: 210.3
Min nTPM: 73.0
Std nTPM: 24.5
Median nTPM: 131.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 210.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 207.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 197.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 184.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 182.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 180.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 179.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 177.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 175.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 174.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 173.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 172.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 172.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 171.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 169.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 168.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 168.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 164.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 163.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 162.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 161.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 161.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 159.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 159.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 158.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 158.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 158.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 157.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 157.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 157.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 156.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 156.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 155.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 155.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 154.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 154.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 152.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 152.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 151.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 151.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 149.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 149.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 148.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 148.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 147.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 147.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 147.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 146.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 146.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 145.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 144.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 144.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 144.4
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 144.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 143.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 143.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 143.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 143.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 143.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 142.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 142.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 141.9
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 141.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 139.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 139.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 139.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 139.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 138.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 136.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 135.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 135.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 135.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 135.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 134.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 134.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 133.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 133.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 133.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 132.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 131.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 131.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 131.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 130.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 130.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 130.2
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 129.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 128.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 128.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 128.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 127.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 127.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 126.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 125.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 125.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 125.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 125.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 124.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 124.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 124.5
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 123.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 123.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 123.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 123.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 122.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 122.4
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 122.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 122.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 121.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 121.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 121.8
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 121.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 121.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 121.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 121.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 120.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 120.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 120.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 120.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 120.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 120.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 119.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 119.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 116.1
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 115.6
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 115.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 115.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 114.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 114.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 113.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 113.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 112.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 111.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 109.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 109.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 109.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 109.1
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 108.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 108.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 108.5
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 107.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 107.4
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 107.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 107.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 106.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 103.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 101.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 101.6
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 101.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 100.1
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 100.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 99.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 96.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 96.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 93.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 92.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 92.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 84.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 79.2
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 73.0
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

149.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 149.4
FF:10181-103D1 60 years, female 186.1
FF:10159-103A6 76 years, female 112.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

161.7
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 144.0
Samples: 4

Max nTPM: 162.0
Min nTPM: 135.1
Sample A Female 135.1
Sample B Female 141.2
Sample C Male 162.0
Sample D Male 137.8
Ventral spinal cord
nTPM: 161.8
Samples: 4

Max nTPM: 185.5
Min nTPM: 136.1
Sample A Female 136.1
Sample B Female 175.0
Sample C Male 185.5
Sample D Male 150.4

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