MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:169.2 nTPM
HPA Brain:299.5 nTPM
GTEx:169.2 nTPM
FANTOM5:127.5 Scaled Tags Per Million
Pig:94.4 nTPM
Mouse:195.9 nTPM
Allen mouse:7.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 299.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 216.5
2586 Male, age 75, left hemisphere 318.1
2666 Male, age 74, left hemisphere 270.5
2828 Female, age 72, unknown 225.4
1827 Male, age 72, unknown 211.5
1870 Female, age 42, unknown 207.9
2411 Female, age 72, unknown 194.8
1833 Male, age 53, unknown 192.7
1830 Male, age 51, unknown 191.0
2219 Male, age 76, both hemispheres 178.8
2019 Male, age 18, unknown 174.5
Dorsal raphe nucleus
nTPM: 223.9
2047 Male, age 72, unknown 285.5
2750 Male, age 76, both hemispheres 255.8
2298 Female, age 72, unknown 223.5
1828 Male, age 53, unknown 192.1
2016 Female, age 72, unknown 162.4
Inferior colliculus
nTPM: 144.8
2849 Male, age 72, unknown 163.4
1890 Male, age 53, unknown 145.5
1848 Female, age 42, unknown 143.1
2097 Female, age 72, unknown 127.1
Median raphe nucleus
nTPM: 299.5
2220 Male, age 76, midline 299.5
Periaquaductal grey, anterior
nTPM: 229.0
1795 Male, age 51, unknown 257.5
1947 Male, age 18, unknown 228.8
2502 Female, age 75, unknown 200.5
Periaquaductal grey, dorsal
nTPM: 175.1
2850 Male, age 76, both hemispheres 200.1
1831 Male, age 72, unknown 170.0
1840 Male, age 53, unknown 167.4
2464 Female, age 72, unknown 162.8
Periaquaductal grey, lateral
nTPM: 166.6
2053 Male, age 18, unknown 166.8
2140 Male, age 76, both hemispheres 166.6
2272 Male, age 74, both hemispheres 166.6
Pretectal area
nTPM: 190.7
2007 Male, age 72, unknown 214.8
1815 Male, age 53, unknown 210.1
1816 Male, age 51, unknown 209.1
1817 Female, age 42, unknown 204.6
2825 Male, age 18, unknown 204.1
2407 Male, age 75, both hemispheres 201.4
1944 Female, age 72, unknown 196.7
2224 Female, age 72, unknown 188.7
2667 Female, age 75, unknown 184.5
2316 Male, age 76, right hemisphere 150.3
2273 Male, age 74, both hemispheres 133.3
Red nucleus
nTPM: 193.4
2584 Male, age 75, left hemisphere 294.1
2725 Female, age 75, unknown 214.4
2588 Male, age 74, left hemisphere 197.2
2785 Male, age 18, unknown 192.5
1865 Male, age 51, unknown 186.6
2769 Male, age 72, unknown 185.0
1904 Male, age 53, unknown 182.4
2823 Male, age 76, right hemisphere 181.3
1821 Female, age 72, unknown 175.7
2227 Male, age 72, unknown 173.4
2503 Female, age 72, unknown 170.1
1954 Female, age 42, unknown 167.9
Substantia nigra
nTPM: 256.6
1916 Female, age 42, unknown 367.3
2665 Male, age 74, both hemispheres 308.8
1851 Male, age 51, unknown 282.1
2583 Male, age 75, right hemisphere 267.5
1941 Male, age 53, unknown 264.6
2699 Male, age 18, unknown 260.1
2590 Female, age 75, unknown 221.0
1889 Female, age 72, unknown 204.0
2409 Female, age 72, unknown 200.1
2241 Male, age 72, unknown 190.4
Superior colliculus
nTPM: 191.4
2664 Male, age 75, both hemispheres 228.3
2668 Female, age 75, unknown 223.6
1796 Male, age 53, unknown 215.6
2261 Male, age 18, unknown 204.3
1913 Female, age 42, unknown 189.5
2587 Male, age 74, left hemisphere 187.4
2087 Female, age 72, unknown 180.4
1995 Male, age 72, unknown 175.7
1839 Male, age 51, unknown 170.7
1895 Male, age 76, right hemisphere 138.1
Ventral tegmental area
nTPM: 238.6
1915 Female, age 42, unknown 258.2
2223 Female, age 72, unknown 256.7
2021 Male, age 53, unknown 244.2
2218 Male, age 76, both hemispheres 236.3
2410 Female, age 72, unknown 221.3
1942 Male, age 51, unknown 214.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 169.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 169.2
Samples: 139

Max nTPM: 291.3
Min nTPM: 82.1
Std nTPM: 33.6
Median nTPM: 165.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 291.3
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 251.5
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 238.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 234.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 231.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 229.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 227.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 227.5
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 226.3
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 226.0
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 224.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 127.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 127.5
FF:10158-103A5 76 years, female 127.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 94.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 94.4
Samples: 4

Max nTPM: 108.7
Min nTPM: 81.0
Sample A Female 108.7
Sample B Female 81.0
Sample C Male 102.3
Sample D Male 85.6
Midbrain
nTPM: 86.4
Samples: 4

Max nTPM: 138.2
Min nTPM: 58.4
Sample A Female 138.2
Sample B Female 81.8
Sample C Male 67.1
Sample D Male 58.4
Periaqueductal gray
nTPM: 72.0
Samples: 3

Max nTPM: 82.0
Min nTPM: 64.7
Sample B Female 69.4
Sample C Male 82.0
Sample D Male 64.7
Superior colliculi
nTPM: 77.4
Samples: 4

Max nTPM: 90.0
Min nTPM: 68.8
Sample A Female 90.0
Sample B Female 73.5
Sample C Male 68.8
Sample D Male 77.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 195.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 195.9
Samples: 4

Max nTPM: 206.7
Min nTPM: 186.1
Sample A Male 202.3
Sample B Male 188.5
Sample C Female 186.1
Sample D Female 206.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 7.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.3
75774677 Antisense, RP_060530_01_D02, Mouse strain C57BL/6J (56 days, male) 12.2
633678 Antisense, RP_040907_02_A10, Mouse strain C57BL/6J (56 days, male) 2.3

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