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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:189.0 nTPM
HPA Brain:206.2 nTPM
GTEx:189.0 nTPM
FANTOM5:100.4 Scaled Tags Per Million
Pig:125.0 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

206.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 178.2
2565 Male, age 75, midline 235.7
2194 Female, age 79, both hemispheres 180.0
2816 Male, age 47, midline 178.8
1981 Female, age 72, midline 158.8
2048 Male, age 55, midline 137.6
Cervical spinal cord, dorsal horn
nTPM: 182.8
2721 Male, age 90, both hemispheres 198.1
2296 Male, age 66, both hemispheres 190.5
2297 Male, age 75, both hemispheres 179.8
2173 Female, age 72, unknown 178.6
1877 Male, age 55, unknown 178.3
2069 Male, age 47, both hemispheres 171.6
Cervical spinal cord, ventral horn
nTPM: 206.2
2480 Male, age 75, both hemispheres 239.2
2809 Male, age 90, both hemispheres 225.9
2295 Male, age 66, both hemispheres 207.3
2820 Female, age 79, both hemispheres 202.4
2068 Male, age 55, unknown 181.9
2098 Female, age 72, unknown 180.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

189.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 189.0
Samples: 159

Max nTPM: 310.0
Min nTPM: 110.0
Std nTPM: 39.9
Median nTPM: 185.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 310.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 295.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 289.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 289.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 282.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 276.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 273.9
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 270.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 260.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 256.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 255.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 254.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 251.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 250.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 248.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 248.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 247.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 243.1
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 242.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 239.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 239.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 236.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 233.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 230.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 230.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 228.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 225.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 223.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 223.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 219.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 219.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 218.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 217.8
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 216.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 215.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 213.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 213.3
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 213.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 211.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 210.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 210.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 208.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 207.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 206.8
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 205.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 204.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 203.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 202.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 202.6
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 201.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 201.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 200.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 200.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 199.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 199.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 199.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 199.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 198.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 198.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 197.5
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 197.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 196.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 196.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 194.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 194.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 193.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 193.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 192.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 191.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 190.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 190.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 190.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 189.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 188.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 188.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 188.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 187.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 187.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 186.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 185.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 185.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 184.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 184.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 183.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 183.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 182.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 182.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 180.2
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 179.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 179.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 179.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 177.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 175.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 175.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 175.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 174.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 173.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 172.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 172.3
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 171.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 171.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 171.4
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 171.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 170.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 169.8
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 169.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 169.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 168.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 167.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 167.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 165.5
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 164.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 163.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 163.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 163.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 162.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 162.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 162.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 162.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 161.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 161.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 160.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 159.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 158.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 157.9
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 156.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 155.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 154.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 154.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 154.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 154.1
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 153.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 152.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 151.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 151.2
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 150.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 149.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 148.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 148.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 143.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 142.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 141.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 141.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 141.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 140.9
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 137.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 137.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 136.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 135.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 135.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 133.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 130.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 129.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 120.2
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 120.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 117.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 117.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 116.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 110.0
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

100.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 100.4
FF:10159-103A6 76 years, female 101.5
FF:10181-103D1 60 years, female 99.3

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

125.0
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 107.5
Samples: 4

Max nTPM: 137.4
Min nTPM: 88.3
Sample A Female 88.3
Sample B Female 102.0
Sample C Male 137.4
Sample D Male 102.4
Ventral spinal cord
nTPM: 125.0
Samples: 4

Max nTPM: 132.8
Min nTPM: 116.0
Sample A Female 116.0
Sample B Female 119.7
Sample C Male 131.4
Sample D Male 132.8

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