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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:204.2 nTPM
HPA Brain:61.4 nTPM
GTEx:204.2 nTPM
FANTOM5:75.5 Scaled Tags Per Million
Pig:38.7 nTPM
Mouse:54.7 nTPM
Allen mouse:0.3 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

61.4
Sample id Sample description nTPM
Amygdala
nTPM: 61.4
2517 Female, age 94, left hemisphere 67.6
1987 Female, age 91, left hemisphere 63.9
2514 Male, age 75, right hemisphere 60.9
2814 Male, age 76, right hemisphere 57.5
2695 Female, age 67, right hemisphere 57.4
Basal amygdala
nTPM: 55.2
2609 Male, age 75, right hemisphere 62.5
2110 Male, age 80, left hemisphere 60.7
1955 Male, age 76, both hemispheres 53.0
2243 Female, age 91, right hemisphere 53.0
2685 Female, age 94, left hemisphere 52.6
2827 Female, age 67, right hemisphere 49.7
Central amygdala
nTPM: 61.3
2826 Female, age 94, left hemisphere 80.4
2515 Male, age 75, right hemisphere 69.9
1905 Male, age 76, both hemispheres 57.0
2239 Male, age 80, left hemisphere 53.7
2701 Female, age 91, right hemisphere 45.3
Corticomedial amygdala
nTPM: 55.3
2428 Male, age 75, right hemisphere 67.2
2829 Male, age 80, left hemisphere 64.6
2429 Female, age 94, left hemisphere 56.8
2242 Female, age 91, right hemisphere 52.2
2240 Male, age 76, both hemispheres 45.8
2535 Female, age 67, right hemisphere 45.0
Lateral amygdala
nTPM: 59.5
2516 Male, age 75, right hemisphere 77.8
2534 Female, age 94, left hemisphere 73.7
1883 Male, age 76, both hemispheres 56.6
2830 Female, age 67, right hemisphere 50.1
2256 Male, age 80, left hemisphere 49.8
2255 Female, age 91, right hemisphere 48.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

204.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 204.2
Samples: 152

Max nTPM: 764.1
Min nTPM: 70.9
Std nTPM: 82.8
Median nTPM: 194.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 764.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 514.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 507.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 465.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 433.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 342.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 334.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 329.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 312.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 312.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 311.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 310.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 307.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 278.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 271.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 268.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 265.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 263.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 259.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 257.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 252.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 251.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 251.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 251.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 250.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 248.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 248.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 247.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 247.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 246.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 243.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 240.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 240.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 236.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 235.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 233.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 232.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 231.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 227.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 224.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 222.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 221.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 221.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 221.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 221.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 221.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 220.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 217.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 215.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 214.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 214.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 213.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 212.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 212.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 211.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 210.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 209.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 208.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 207.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 207.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 205.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 205.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 205.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 203.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 201.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 199.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 197.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 197.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 197.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 197.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 196.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 196.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 195.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 195.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 194.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 194.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 193.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 188.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 187.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 186.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 185.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 185.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 182.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 182.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 182.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 181.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 180.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 179.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 178.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 176.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 176.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 175.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 175.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 175.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 175.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 174.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 174.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 174.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 173.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 171.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 169.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 169.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 166.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 165.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 164.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 164.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 162.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 162.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 161.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 161.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 157.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 154.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 153.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 153.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 152.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 151.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 151.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 150.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 149.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 149.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 146.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 146.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 145.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 145.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 145.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 145.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 143.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 143.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 142.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 142.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 141.9
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 141.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 139.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 139.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 138.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 135.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 132.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 131.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 131.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 131.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 130.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 126.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 123.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 119.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 116.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 114.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 108.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 100.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 100.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 99.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 96.5
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 70.9
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

75.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 75.5
FF:10151-102I7 76 years, female 75.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

38.7
Pig sample Sample description nTPM
Amygdala
nTPM: 38.7
Samples: 4

Max nTPM: 47.5
Min nTPM: 29.2
Sample A Female 47.5
Sample B Female 36.2
Sample C Male 41.8
Sample D Male 29.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

54.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 54.8
Samples: 4

Max nTPM: 59.2
Min nTPM: 50.9
Sample A Male 50.9
Sample B Male 54.9
Sample C Female 59.2
Sample D Female 54.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.3
70445580 Antisense, RP_050614_04_B05, Mouse strain C57BL/6J (56 days, male) 0.3

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