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COL6A1
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  • COL6A1
BRAIN CEREBELLUM Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Cerebellum
CEREBELLUM - Expression summary
Protein expression
Cerebellumi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Cells in granular layer: Not detected
Cells in molecular layer: Not detected
Purkinje cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:133.8 nTPM
HPA Brain:85.1 nTPM
GTEx:133.8 nTPM
FANTOM5:219.4 Scaled Tags Per Million
Pig:3.1 nTPM
Mouse:4.4 nTPM
Allen mouse:1.7 Expression energy

CEREBELLUM - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA019142Antibody HPA029401
Purkinje cells Not detectedNot detected
Cells in granular layer Not detectedNot detected
Cells in molecular layer Not detectedNot detected





CEREBELLUM - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

85.1
Sample id Sample description nTPM
Cerebellar cortex
nTPM: 76.2
1788 Male, age 55, unknown 107.4
2055 Female, age 91, right hemisphere 102.5
1774 Male, age 80, left hemisphere 87.7
1769 Male, age 76, right hemisphere 80.2
1768 Female, age 72, unknown 74.0
2101 Male, age 74, right hemisphere 62.1
2003 Female, age 85, right hemisphere 50.4
2006 Male, age 61, right hemisphere 45.3
Cerebellar nuclei
nTPM: 43.6
2177 Female, age 85, both hemispheres 53.3
2882 Male, age 76, left hemisphere 53.2
1966 Female, age 91, left hemisphere 48.2
2175 Male, age 61, right hemisphere 47.7
2783 Female, age 72, unknown 43.8
2005 Male, age 80, left hemisphere 40.2
1871 Male, age 74, unknown 37.6
2318 Male, age 74, left hemisphere 37.0
1879 Male, age 55, unknown 31.3
Flocculonodular lobe
nTPM: 85.1
2176 Female, age 91, right hemisphere 126.2
1792 Male, age 74, unknown 103.4
1771 Male, age 80, left hemisphere 96.3
1767 Male, age 76, left hemisphere 77.1
1765 Male, age 55, unknown 76.3
1835 Female, age 85, right hemisphere 73.1
2004 Male, age 61, right hemisphere 43.5
Vermis
nTPM: 81.4
1778 Female, age 91, left hemisphere 107.2
1825 Male, age 74, unknown 103.2
1988 Female, age 85, left hemisphere 95.6
2834 Male, age 80, left hemisphere 89.3
1766 Male, age 55, unknown 87.3
1770 Male, age 76, left hemisphere 86.1
1928 Female, age 72, unknown 77.8
1751 Male, age 74, right hemisphere 51.9
2460 Male, age 61, both hemispheres 34.0

CEREBELLUM - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

133.8
GTEx sample id Sample description nTPM
Brain - Cerebellar Hemisphere
Average nTPM: 122.5
Samples: 215

Max nTPM: 276.5
Min nTPM: 20.6
Std nTPM: 35.6
Median nTPM: 120.4
GTEX-1H3O1-0011-R11a-SM-A96RV 60-69 years, male 276.5
GTEX-X585-0011-R11B-SM-46MUZ 50-59 years, male 236.0
GTEX-18464-0011-R11a-SM-72D76 50-59 years, male 219.3
GTEX-XMD1-0011-R11A-SM-4AT5J 60-69 years, male 211.0
GTEX-1F52S-0011-R11a-SM-CJI23 60-69 years, female 210.1
GTEX-14BIM-0011-R11b-SM-5S2RN 60-69 years, female 207.3
GTEX-13OVJ-0011-R11a-SM-5P9H8 50-59 years, female 205.4
GTEX-1ICLZ-0011-R11a-SM-CJI3N 60-69 years, male 202.3
GTEX-13JVG-0011-R11a-SM-5KM53 60-69 years, male 199.8
GTEX-13OW5-0011-R11b-SM-5L3GG 60-69 years, male 189.4
GTEX-17JCI-0011-R11a-SM-7189Y 60-69 years, female 182.9
GTEX-145MI-0011-R11a-SM-5P9JZ 60-69 years, female 181.1
GTEX-RU72-0011-R11A-SM-CM2U1 50-59 years, female 178.9
GTEX-11DZ1-0011-R11b-SM-DO11W 50-59 years, male 178.1
GTEX-1H3VE-0011-R11b-SM-C1YRP 40-49 years, male 176.6
GTEX-13X6I-0011-R11a-SM-5P9HN 60-69 years, male 171.9
GTEX-13SLW-0011-R11a-SM-5SI8Q 70-79 years, male 170.2
GTEX-13NYB-0011-R11a-SM-5KM3Q 40-49 years, male 170.1
GTEX-T5JC-0011-R11A-SM-32PMB 20-29 years, male 168.4
GTEX-NPJ8-0011-R11A-SM-2YUMS 40-49 years, male 166.8
GTEX-13OVH-0011-R11b-SM-5KM4X 70-79 years, male 165.5
GTEX-WL46-0011-R11A-SM-3MJFT 50-59 years, male 165.5
GTEX-13FHP-0011-R11b-SM-5LZXP 50-59 years, male 164.3
GTEX-Z93S-0011-R11a-SM-4RGNN 50-59 years, male 164.3
GTEX-1J1OQ-0011-R11a-SM-A96S3 40-49 years, female 163.1
GTEX-16NPV-0011-R11a-SM-7IGMK 50-59 years, female 162.3
GTEX-1A3MX-0011-R11b-SM-7DUGP 60-69 years, male 162.1
GTEX-X261-0011-R11A-SM-4E3JY 50-59 years, male 160.0
GTEX-13RTJ-0011-R11a-SM-5O9CK 60-69 years, male 159.8
GTEX-131YS-0011-R11b-SM-5EGLM 60-69 years, female 159.6
GTEX-13QIC-0011-R11b-SM-5O9BU 60-69 years, female 158.4
GTEX-139TT-0011-R11b-SM-5LZV1 60-69 years, male 158.2
GTEX-13FLV-0011-R11a-SM-5LZZ7 50-59 years, male 157.9
GTEX-ZDXO-0011-R11a-SM-4WWD9 60-69 years, male 155.4
GTEX-13NYS-0011-R11b-SM-5MR4P 60-69 years, male 154.7
GTEX-11GSP-0011-R11b-SM-5NQ7V 60-69 years, female 154.5
GTEX-1I1HK-0011-R11a-SM-B2LVN 60-69 years, male 151.8
GTEX-ZVT3-0011-R11b-SM-57WBI 60-69 years, female 151.0
GTEX-17EVQ-0011-R11a-SM-7LT9C 70-79 years, male 150.9
GTEX-13S7M-0011-R11b-SM-5P9HU 60-69 years, female 150.4
GTEX-15DCD-0011-R11a-SM-D4P1R 70-79 years, female 149.1
GTEX-YJ89-0011-R11a-SM-4SOKA 60-69 years, male 148.4
GTEX-11OF3-0011-R11a-SM-57WCR 60-69 years, male 147.7
GTEX-13PVQ-0011-R11a-SM-5O9DU 50-59 years, male 147.6
GTEX-1399T-0011-R11a-SM-5J2O1 60-69 years, male 147.5
GTEX-12WSF-0011-R11a-SM-5LZVT 70-79 years, male 146.3
GTEX-17F97-0011-R11b-SM-7KFRQ 50-59 years, male 146.3
GTEX-1B8L1-0011-R11b-SM-793DJ 60-69 years, male 145.1
GTEX-12WSD-0011-R11a-SM-9OSVC 60-69 years, female 144.4
GTEX-ZE9C-0011-R11a-SM-4WKGG 60-69 years, male 142.7
GTEX-NPJ7-0011-R11A-SM-2I3E8 60-69 years, female 142.4
GTEX-13SLX-0011-R11b-SM-5O9C8 50-59 years, female 142.0
GTEX-1IL2V-0011-R11a-SM-ARU6T 70-79 years, male 141.8
GTEX-P44G-0011-R11A-SM-2I3FD 30-39 years, male 141.7
GTEX-1IDJH-0011-R11b-SM-C1YRT 70-79 years, male 141.4
GTEX-11DXY-0011-R11a-SM-DNZZN 60-69 years, male 140.1
GTEX-13NZA-0011-R11b-SM-5KM4W 60-69 years, male 138.9
GTEX-11EMC-0011-R11b-SM-DNZZK 60-69 years, female 138.5
GTEX-145LU-0011-R11b-SM-5P9JX 50-59 years, male 137.9
GTEX-11PRG-0011-R11b-SM-DNZZY 50-59 years, male 137.9
GTEX-145MH-0011-R11a-SM-5P9HQ 50-59 years, male 137.6
GTEX-13OW6-0011-R11a-SM-5L3H2 50-59 years, male 137.2
GTEX-1IGQW-0011-R11a-SM-C1YRV 60-69 years, male 137.0
GTEX-13PLJ-0011-R11b-SM-5O9BS 60-69 years, female 136.1
GTEX-ZAB4-0011-R11a-SM-4SOKI 40-49 years, male 135.8
GTEX-13G51-0011-R11b-SM-5J2NE 60-69 years, male 135.6
GTEX-1JMQJ-0011-R11a-SM-EXOJY 50-59 years, male 135.5
GTEX-12ZZX-0011-R11a-SM-5DUVJ 40-49 years, female 134.8
GTEX-14E6D-0011-R11b-SM-664NP 50-59 years, male 134.0
GTEX-1KD4Q-0011-R11b-SM-EXOIE 40-49 years, male 133.8
GTEX-1I1GR-0011-R11a-SM-CM2T5 60-69 years, male 133.6
GTEX-183WM-0011-R11a-SM-718A5 70-79 years, female 133.1
GTEX-13OVL-0011-R11b-SM-5L3G7 50-59 years, male 132.9
GTEX-1GMRU-0011-R11b-SM-C1YQ4 50-59 years, male 131.9
GTEX-144GL-0011-R11b-SM-5P9F6 50-59 years, male 131.7
GTEX-1HUB1-0011-R11b-SM-CE6SC 60-69 years, male 131.5
GTEX-131XH-0011-R11a-SM-5EGLN 50-59 years, male 131.2
GTEX-1I19N-0011-R11b-SM-ARU6Y 70-79 years, male 130.9
GTEX-1IL2U-0011-R11a-SM-CE6SO 60-69 years, male 130.6
GTEX-13OW7-0011-R11a-SM-5O9DY 50-59 years, male 130.1
GTEX-ZE7O-0011-R11a-SM-57WBC 50-59 years, female 129.6
GTEX-1I1GV-0011-R11a-SM-CJI3Z 60-69 years, male 129.5
GTEX-14BIN-0011-R11a-SM-5SI79 50-59 years, female 129.1
GTEX-1HB9E-0011-R11b-SM-ARU79 50-59 years, male 129.0
GTEX-12WSM-0011-R11a-SM-5DUX8 60-69 years, male 128.9
GTEX-15DYW-0011-R11a-SM-6LPIT 60-69 years, female 128.4
GTEX-17EVP-0011-R11a-SM-7EWDL 40-49 years, male 128.1
GTEX-13CZV-0011-R11b-SM-5N9FN 60-69 years, male 126.7
GTEX-14PN4-0011-R11a-SM-686ZW 50-59 years, male 126.6
GTEX-1HGF4-0011-R11a-SM-C1YRR 60-69 years, male 125.8
GTEX-13N2G-0011-R11a-SM-5MR3F 60-69 years, male 125.7
GTEX-11H98-0011-R11b-SM-5NQ6U 50-59 years, male 125.5
GTEX-1GZHY-0011-R11a-SM-C1YRQ 50-59 years, female 125.2
GTEX-12WSH-0011-R11a-SM-5LZVM 50-59 years, male 125.1
GTEX-14DAQ-0011-R11a-SM-664NO 60-69 years, female 124.7
GTEX-1I1GQ-0011-R11b-SM-CKZPA 50-59 years, male 124.7
GTEX-11WQC-0011-R11b-SM-57WD6 60-69 years, male 123.8
GTEX-1GTWX-0011-R11b-SM-C1YQJ 60-69 years, male 123.8
GTEX-1IKOH-0011-R11a-SM-AHZ38 60-69 years, female 123.8
GTEX-1GZ4I-0011-R11b-SM-9OSWR 50-59 years, male 123.7
GTEX-UTHO-0011-R11A-SM-3GIJE 60-69 years, male 123.6
GTEX-1B8SF-0011-R11a-SM-79OOP 60-69 years, male 122.7
GTEX-14ABY-0011-R11a-SM-5SI7C 50-59 years, male 121.3
GTEX-11EI6-0011-R11a-SM-DO11V 60-69 years, male 121.3
GTEX-1H1ZS-0011-R11a-SM-C1YQM 70-79 years, male 121.0
GTEX-1H4P4-0011-R11b-SM-CE6S8 50-59 years, male 120.8
GTEX-13FHO-0011-R11b-SM-5LZYQ 60-69 years, male 120.5
GTEX-NL3H-0011-R11A-SM-2I3E6 60-69 years, male 120.4
GTEX-18465-0011-R11a-SM-72D78 50-59 years, male 120.2
GTEX-15CHQ-0011-R11b-SM-686ZZ 60-69 years, male 119.8
GTEX-11TTK-0011-R11b-SM-DO112 60-69 years, female 119.4
GTEX-13O3Q-0011-R11b-SM-5KM2W 50-59 years, male 119.1
GTEX-13OW8-0011-R11a-SM-5L3GT 60-69 years, male 119.0
GTEX-WVLH-0011-R11A-SM-3MJFO 50-59 years, male 118.8
GTEX-11DYG-0011-R11a-SM-DNZZP 60-69 years, male 118.7
GTEX-1N2DW-0011-R11b-SM-EXOIL 50-59 years, male 118.7
GTEX-1M4P7-0011-R11b-SM-EXOIK 60-69 years, male 118.3
GTEX-1H3NZ-0011-R11b-SM-CE6SF 60-69 years, male 117.7
GTEX-1313W-0011-R11a-SM-5DUXN 50-59 years, female 116.9
GTEX-13VXU-0011-R11b-SM-5O9DJ 50-59 years, male 116.9
GTEX-1IY9M-0011-R11b-SM-A96TI 60-69 years, male 116.4
GTEX-1BAJH-0011-R11b-SM-7IGLM 70-79 years, male 116.1
GTEX-1B933-0011-R11a-SM-7P8PM 50-59 years, female 115.7
GTEX-1H1DG-0011-R11a-SM-C1YQK 70-79 years, male 115.1
GTEX-15G19-0011-R11b-SM-6LPIH 60-69 years, male 115.0
GTEX-17HG3-0011-R11b-SM-7KFT4 30-39 years, female 113.3
GTEX-WZTO-0011-R11A-SM-4E3K9 40-49 years, male 113.2
GTEX-13CF2-0011-R11b-SM-5LZXO 60-69 years, male 113.1
GTEX-1HBPI-0011-R11b-SM-CE6SH 50-59 years, male 112.7
GTEX-1F48J-0011-R11b-SM-9OSWV 50-59 years, female 112.4
GTEX-1IKK5-0011-R11a-SM-C1YRX 60-69 years, male 111.4
GTEX-13FXS-0011-R11a-SM-5L3DM 50-59 years, male 111.0
GTEX-1E1VI-0011-R11a-SM-9OSWI 50-59 years, male 110.1
GTEX-X4XX-0011-R11A-SM-46MWQ 60-69 years, male 109.9
GTEX-WWYW-0011-R11A-SM-3NB38 50-59 years, female 109.0
GTEX-13FTY-0011-R11a-SM-5IJEA 40-49 years, female 108.7
GTEX-132Q8-0011-R11b-SM-5DUW9 60-69 years, male 108.6
GTEX-14ASI-0011-R11b-SM-6AJBJ 60-69 years, male 108.3
GTEX-S7SE-0011-R11A-SM-2XCDD 50-59 years, male 108.2
GTEX-12WSE-0011-R11b-SM-5P9JW 20-29 years, male 107.8
GTEX-11ZTS-0011-R11a-SM-DO113 60-69 years, female 107.7
GTEX-1GMR8-0011-R11b-SM-9OSX2 50-59 years, female 107.1
GTEX-Q2AG-0011-R11A-SM-2HMKZ 40-49 years, female 107.0
GTEX-1N2EE-0011-R11b-SM-EXOIJ 60-69 years, male 107.0
GTEX-1F75W-0011-R11b-SM-AHZ34 60-69 years, male 106.8
GTEX-13JUV-0011-R11a-SM-5LZYH 40-49 years, female 106.3
GTEX-1HSKV-0011-R11b-SM-AHZ2E 60-69 years, male 106.3
GTEX-1AX9I-0011-R11b-SM-7DHN4 60-69 years, male 106.2
GTEX-1EKGG-0011-R11a-SM-9QEHZ 60-69 years, male 105.4
GTEX-12WSI-0011-R11b-SM-5P9EZ 50-59 years, male 103.2
GTEX-16GPK-0011-R11b-SM-7MKFF 60-69 years, male 103.1
GTEX-1LG7Y-0011-R11a-SM-EXOIH 50-59 years, male 102.5
GTEX-1I1GS-0011-R11a-SM-C1YRU 60-69 years, male 102.3
GTEX-13O3O-0011-R11b-SM-5KM4G 60-69 years, female 102.1
GTEX-1J8EW-0011-R11a-SM-AHZ37 60-69 years, female 101.6
GTEX-T2IS-0011-R11A-SM-32QPC 20-29 years, female 100.9
GTEX-1LVAO-0011-R11b-SM-EXOI8 60-69 years, male 100.8
GTEX-14C5O-0011-R11b-SM-6872H 60-69 years, male 100.5
GTEX-YFC4-0011-R11a-SM-4SOK6 40-49 years, female 100.3
GTEX-12ZZZ-0011-R11a-SM-5EGLC 60-69 years, male 99.9
GTEX-1J8Q2-0011-R11a-SM-A9SKI 60-69 years, male 99.3
GTEX-1LSVX-0011-R11b-SM-EXOIA 60-69 years, male 99.2
GTEX-16XZZ-0011-R11a-SM-7EPI3 60-69 years, male 98.4
GTEX-X4EP-0011-R11B-SM-4QASK 60-69 years, female 98.2
GTEX-1F75A-0011-R11a-SM-AHZ35 50-59 years, male 98.2
GTEX-N7MS-0011-R11A-SM-2HMJS 60-69 years, male 97.2
GTEX-1H1CY-0011-R11a-SM-C1YQR 60-69 years, female 97.2
GTEX-1R9K4-0011-R11a-SM-EZ6N9 60-69 years, male 96.6
GTEX-1F7RK-0011-R11b-SM-9QEI2 20-29 years, female 96.5
GTEX-1HCU6-0011-R11b-SM-AHZ2F 60-69 years, female 96.3
GTEX-Y8DK-0011-R11A-SM-4SOK2 60-69 years, male 96.0
GTEX-1LKK1-0011-R11a-SM-EXOIG 50-59 years, female 95.3
GTEX-WHSE-0011-R11A-SM-3P5YY 20-29 years, male 95.2
GTEX-18A6Q-0011-R11a-SM-72D6H 60-69 years, male 94.0
GTEX-1IOXB-0011-R11a-SM-A9G1X 50-59 years, male 92.5
GTEX-15EO6-0011-R11b-SM-6M47M 50-59 years, male 91.9
GTEX-17HII-0011-R11b-SM-7KFSX 50-59 years, male 91.7
GTEX-13X6J-0011-R11a-SM-5P9HE 50-59 years, male 91.4
GTEX-1C64N-0011-R11b-SM-7P8Q6 50-59 years, male 91.0
GTEX-1JJEA-0011-R11a-SM-EXUTE 60-69 years, male 90.7
GTEX-15ER7-0011-R11a-SM-6LPIL 20-29 years, female 90.3
GTEX-OHPN-0011-R11A-SM-2I5FM 60-69 years, female 90.2
GTEX-NL4W-0011-R11A-SM-2I3DW 50-59 years, male 90.0
GTEX-ZVZQ-0011-R11a-SM-51MS6 60-69 years, female 88.4
GTEX-131XW-0011-R11a-SM-5DUV9 50-59 years, female 88.2
GTEX-1CB4G-0011-R11a-SM-9OSWG 60-69 years, male 87.9
GTEX-16YQH-0011-R11b-SM-7LT98 30-39 years, male 87.8
GTEX-1F6I4-0011-R11b-SM-9OSWS 60-69 years, male 87.4
GTEX-R55E-0011-R11A-SM-2TC6I 20-29 years, male 85.4
GTEX-QMR6-0011-R11A-SM-32PKK 50-59 years, male 84.7
GTEX-11ZUS-0011-R11b-SM-5BC7B 30-39 years, male 83.8
GTEX-ZUA1-0011-R11b-SM-51MTI 40-49 years, male 83.8
GTEX-T6MN-0011-R11A-SM-32QOX 50-59 years, male 82.8
GTEX-1GF9W-0011-R11b-SM-9OSXG 60-69 years, male 82.2
GTEX-1JJ6O-0011-R11b-SM-EXUS2 60-69 years, male 81.2
GTEX-1EMGI-0011-R11b-SM-9OSWX 60-69 years, male 80.4
GTEX-RVPV-0011-R11A-SM-2TF6F 60-69 years, male 78.5
GTEX-12126-0011-R11a-SM-5BC6X 20-29 years, male 77.1
GTEX-1GN73-0011-R11b-SM-9OSX4 60-69 years, male 76.9
GTEX-14E7W-0011-R11a-SM-5ZZVA 70-79 years, male 76.3
GTEX-QDT8-0011-R11A-SM-32PKD 30-39 years, female 76.2
GTEX-13X6K-0011-R11a-SM-5P9F5 60-69 years, female 75.5
GTEX-1R9PO-0011-R11b-SM-EZ6NB 60-69 years, female 75.1
GTEX-1HFI6-0011-R11b-SM-A96RU 40-49 years, male 73.0
GTEX-P44H-0011-R11A-SM-2XCER 40-49 years, male 71.3
GTEX-TSE9-0011-R11A-SM-3DB7N 60-69 years, female 71.3
GTEX-1JMOU-0011-R11b-SM-EXUTA 60-69 years, female 70.8
GTEX-139UW-0011-R11a-SM-5IJGN 60-69 years, male 64.1
GTEX-14C39-0011-R11b-SM-5YYAF 40-49 years, male 63.6
GTEX-12WSC-0011-R11a-SM-5GU5J 50-59 years, male 55.2
GTEX-ZF28-0011-R11a-SM-4WWEI 60-69 years, male 53.4
GTEX-1CAV2-0011-R11a-SM-ARU8D 40-49 years, female 52.7
GTEX-1B8SG-0011-R11a-SM-7P8PF 50-59 years, male 50.5
GTEX-16Z82-0011-R11a-SM-79OKJ 60-69 years, male 34.0
GTEX-N7MT-0011-R11A-SM-2I3DZ 60-69 years, female 20.6
Show allShow less
Brain - Cerebellum
Average nTPM: 133.8
Samples: 241

Max nTPM: 246.7
Min nTPM: 47.5
Std nTPM: 36.5
Median nTPM: 134.8
GTEX-1H3O1-1826-SM-A96TO 60-69 years, male 246.7
GTEX-1JMLX-3026-SM-EV79Q 50-59 years, male 223.0
GTEX-XMD1-2826-SM-4AT5F 60-69 years, male 221.6
GTEX-13NYB-3226-SM-5J2ND 40-49 years, male 218.4
GTEX-UTHO-2926-SM-3P5Z9 60-69 years, male 216.6
GTEX-1A3MX-2926-SM-718B7 60-69 years, male 212.1
GTEX-1F52S-3026-SM-7P8PV 60-69 years, female 210.2
GTEX-13JVG-3226-SM-5IJGJ 60-69 years, male 206.4
GTEX-12ZZY-2926-SM-5DUXO 60-69 years, male 201.5
GTEX-13G51-3126-SM-5IJG7 60-69 years, male 201.4
GTEX-WL46-2826-SM-3LK81 50-59 years, male 200.8
GTEX-12WSM-2126-SM-5GCOC 60-69 years, male 199.6
GTEX-1JMQK-2926-SM-D4P2T 60-69 years, male 199.1
GTEX-1C6VR-3026-SM-7IGLW 60-69 years, male 193.6
GTEX-ZYFD-2926-SM-5GID9 50-59 years, male 191.9
GTEX-Y111-2826-SM-4TT3O 50-59 years, male 190.1
GTEX-11DXW-1026-SM-5H11K 40-49 years, male 187.9
GTEX-1HSKV-2926-SM-B2LWJ 60-69 years, male 186.9
GTEX-Z93S-2826-SM-57WBL 50-59 years, male 186.5
GTEX-13RTJ-3126-SM-5S2Q4 60-69 years, male 184.6
GTEX-14BIM-3126-SM-5Q5C7 60-69 years, female 183.9
GTEX-1B8SG-1926-SM-73KUB 50-59 years, male 182.4
GTEX-1J1OQ-3126-SM-D4P2O 40-49 years, female 182.3
GTEX-131YS-3026-SM-5EGHY 60-69 years, female 181.4
GTEX-11ZUS-2826-SM-5EQKW 30-39 years, male 180.8
GTEX-1NV8Z-3026-SM-DTX8Z 60-69 years, male 180.4
GTEX-ZVT3-2926-SM-5GU6M 60-69 years, female 180.2
GTEX-13OVJ-2726-SM-5IJG6 50-59 years, female 179.0
GTEX-ZAK1-2926-SM-5HL9S 50-59 years, female 178.4
GTEX-17F97-2926-SM-7DUEQ 50-59 years, male 178.3
GTEX-12ZZZ-3126-SM-5LZU6 60-69 years, male 177.9
GTEX-11DXY-3126-SM-5N9BT 60-69 years, male 177.3
GTEX-X261-3126-SM-4PQZC 50-59 years, male 177.2
GTEX-13PVQ-2926-SM-5L3HJ 50-59 years, male 176.0
GTEX-1P4AB-3026-SM-EXOJS 50-59 years, male 176.0
GTEX-1I1CD-2926-SM-A96SJ 60-69 years, female 174.1
GTEX-17EVQ-2726-SM-7EWDT 70-79 years, male 173.8
GTEX-14PN4-3026-SM-664O4 50-59 years, male 172.4
GTEX-1C64N-3126-SM-79OO3 50-59 years, male 172.3
GTEX-1GZ4I-2926-SM-9JGGO 50-59 years, male 171.4
GTEX-1JMQJ-3126-SM-EV79G 50-59 years, male 170.2
GTEX-13S7M-3026-SM-5S2QQ 60-69 years, female 170.1
GTEX-131XH-2926-SM-5LZU4 50-59 years, male 167.4
GTEX-T5JC-2326-SM-32PMR 20-29 years, male 167.4
GTEX-1JMPZ-2826-SM-C1YRA 30-39 years, male 167.2
GTEX-145MF-2826-SM-7EPGU 50-59 years, male 166.5
GTEX-ZDXO-2926-SM-4WKFM 60-69 years, male 166.3
GTEX-13X6I-2926-SM-5Q5C3 60-69 years, male 165.2
GTEX-YFC4-3026-SM-5IFJK 40-49 years, female 165.0
GTEX-YJ89-2926-SM-5P9IT 60-69 years, male 164.8
GTEX-1HSMO-2926-SM-C1YR5 60-69 years, male 164.7
GTEX-13OVH-2926-SM-5IJFH 70-79 years, male 164.2
GTEX-13FHP-2926-SM-5IJG9 50-59 years, male 163.0
GTEX-1B933-3026-SM-731DB 50-59 years, female 162.2
GTEX-1128S-2826-SM-5N9DI 60-69 years, female 161.1
GTEX-1IL2V-3026-SM-CYPSA 70-79 years, male 160.8
GTEX-14ABY-3026-SM-664NE 50-59 years, male 159.8
GTEX-1IDJH-3126-SM-C1YQS 70-79 years, male 159.8
GTEX-1RDX4-3226-SM-DPS14 50-59 years, female 158.7
GTEX-1EKGG-3126-SM-9WPO5 60-69 years, male 157.7
GTEX-14JIY-2326-SM-6AJAJ 60-69 years, male 157.2
GTEX-N7MT-1226-SM-DKPOK 60-69 years, female 156.6
GTEX-XLM4-2926-SM-4AT59 60-69 years, male 156.5
GTEX-1B8L1-3226-SM-7P8OX 60-69 years, male 156.3
GTEX-1399T-3126-SM-5IJFS 60-69 years, male 156.1
GTEX-111FC-3326-SM-5GZYV 60-69 years, male 155.8
GTEX-16YQH-2926-SM-6LPJE 30-39 years, male 155.8
GTEX-1JJ6O-3026-SM-C1YQH 60-69 years, male 154.4
GTEX-14BIN-3326-SM-5Q5E6 50-59 years, female 153.9
GTEX-14E6D-2926-SM-664OP 50-59 years, male 153.0
GTEX-13OW7-2926-SM-5MR3Z 50-59 years, male 152.1
GTEX-14ASI-2926-SM-5Q5DG 60-69 years, male 151.9
GTEX-17EVP-2926-SM-793BU 40-49 years, male 151.6
GTEX-13OW6-2926-SM-5KM29 50-59 years, male 151.5
GTEX-117XS-3126-SM-5GIDP 60-69 years, male 151.2
GTEX-13OW5-3126-SM-5MR3Y 60-69 years, male 150.6
GTEX-145LS-3026-SM-5O99S 60-69 years, female 149.6
GTEX-14JFF-2826-SM-6871Q 60-69 years, male 149.2
GTEX-13QIC-3026-SM-5LU58 60-69 years, female 147.8
GTEX-17HHY-2926-SM-79OJW 50-59 years, male 147.6
GTEX-14E7W-2926-SM-5S2R8 70-79 years, male 146.9
GTEX-1IKOH-2826-SM-CNNRC 60-69 years, female 146.9
GTEX-13N2G-3126-SM-5IJGL 60-69 years, male 145.8
GTEX-1GTWX-2926-SM-7MXV4 60-69 years, male 145.5
GTEX-1LG7Y-3126-SM-EV7AS 50-59 years, male 145.4
GTEX-12WSD-3026-SM-5LZU7 60-69 years, female 145.0
GTEX-11GSP-3126-SM-5A5LL 60-69 years, female 144.3
GTEX-11ZTS-3226-SM-5EGID 60-69 years, female 144.0
GTEX-1KWVE-2226-SM-CXZKN 30-39 years, male 144.0
GTEX-T6MN-2526-SM-32PMN 50-59 years, male 143.7
GTEX-14C39-3026-SM-5S2QE 40-49 years, male 143.1
GTEX-1JJEA-2926-SM-C1YSK 60-69 years, male 143.0
GTEX-12WSH-3126-SM-5LZW8 50-59 years, male 142.7
GTEX-1PIIG-2826-SM-DTX7O 30-39 years, male 142.6
GTEX-14PJM-3026-SM-6LLHM 50-59 years, female 142.0
GTEX-13OVL-3026-SM-5IJF1 50-59 years, male 141.9
GTEX-139TT-2626-SM-5LZUB 60-69 years, male 141.3
GTEX-1E1VI-2926-SM-7IGLT 50-59 years, male 140.5
GTEX-WVLH-2926-SM-3MJG5 50-59 years, male 140.5
GTEX-145MG-3126-SM-5Q5D3 50-59 years, male 140.3
GTEX-1EX96-3126-SM-9JGGC 50-59 years, male 140.2
GTEX-17JCI-3026-SM-7EWDR 60-69 years, female 139.3
GTEX-18465-2926-SM-7KFSE 50-59 years, male 139.1
GTEX-1313W-3026-SM-5LZUZ 50-59 years, female 138.8
GTEX-11DZ1-2926-SM-5A5KI 50-59 years, male 138.5
GTEX-ZYY3-3026-SM-5GIEJ 60-69 years, female 138.4
GTEX-15SHU-3026-SM-6LPIB 40-49 years, female 138.3
GTEX-13SLX-3226-SM-5YYA6 50-59 years, female 137.8
GTEX-1LSVX-2826-SM-EVR58 60-69 years, male 137.7
GTEX-Q2AG-2826-SM-2HMJQ 40-49 years, female 137.5
GTEX-1F75A-2926-SM-7MXVN 50-59 years, male 137.2
GTEX-11ONC-3026-SM-5985W 60-69 years, male 136.8
GTEX-1HB9E-3126-SM-AHZ4M 50-59 years, male 136.1
GTEX-1192X-3226-SM-5987D 50-59 years, male 136.0
GTEX-1HBPI-2726-SM-9WPPF 50-59 years, male 136.0
GTEX-15EO6-2926-SM-6M48D 50-59 years, male 135.9
GTEX-132Q8-2926-SM-5IFFP 60-69 years, male 135.7
GTEX-1KANB-3226-SM-D4P3G 50-59 years, male 135.5
GTEX-145LU-2626-SM-5LU9Z 50-59 years, male 135.2
GTEX-11NUK-3026-SM-5986K 50-59 years, male 135.0
GTEX-17HG3-2826-SM-7EPGO 30-39 years, female 134.8
GTEX-1A8G6-3126-SM-731D8 60-69 years, male 132.8
GTEX-1EU9M-2926-SM-793DF 60-69 years, male 132.2
GTEX-12ZZX-2826-SM-5BC6K 40-49 years, female 132.0
GTEX-144GL-2926-SM-5O99F 50-59 years, male 132.0
GTEX-14JG1-2926-SM-686ZK 40-49 years, male 131.8
GTEX-1KD4Q-3026-SM-EV7A7 40-49 years, male 131.6
GTEX-15DYW-3026-SM-7KFRM 60-69 years, female 131.5
GTEX-1MJK2-3026-SM-EV7A5 50-59 years, male 130.6
GTEX-13O3Q-3026-SM-5IJGD 50-59 years, male 129.4
GTEX-1CB4G-2926-SM-7MKFQ 60-69 years, male 128.6
GTEX-1B996-2926-SM-7MXUH 60-69 years, male 127.7
GTEX-11PRG-2826-SM-5BC54 50-59 years, male 127.3
GTEX-14DAQ-3026-SM-5S2QZ 60-69 years, female 127.1
GTEX-X4XX-2926-SM-3NMB1 60-69 years, male 126.7
GTEX-1H1DG-2826-SM-9JGHB 70-79 years, male 126.5
GTEX-1F48J-2726-SM-7P8PW 50-59 years, female 126.3
GTEX-1R46S-3126-SM-DPRZ9 60-69 years, female 125.9
GTEX-1GF9V-3026-SM-7P8R8 60-69 years, male 125.3
GTEX-145MH-2926-SM-5Q5D2 50-59 years, male 125.1
GTEX-13112-2926-SM-5DUWT 50-59 years, male 124.4
GTEX-1GZHY-3026-SM-7MXVA 50-59 years, female 124.1
GTEX-11DYG-2926-SM-5H132 60-69 years, male 124.0
GTEX-1R9PO-2826-SM-E6CPV 60-69 years, female 123.3
GTEX-15ER7-3026-SM-6M47W 20-29 years, female 122.0
GTEX-1H4P4-2726-SM-9JGGB 50-59 years, male 121.2
GTEX-1C6WA-3326-SM-7MKGN 60-69 years, male 120.8
GTEX-1JN1M-3126-SM-AHZ4E 60-69 years, female 120.8
GTEX-13FXS-3026-SM-5LZYO 50-59 years, male 120.5
GTEX-183WM-2726-SM-7KFRF 70-79 years, female 120.5
GTEX-1A8G7-3026-SM-73KTT 60-69 years, male 120.0
GTEX-1B8SF-3026-SM-731DX 60-69 years, male 119.3
GTEX-11EI6-2926-SM-5985U 60-69 years, male 118.8
GTEX-1RQEC-3026-SM-DPRXM 60-69 years, male 118.4
GTEX-13OW8-2926-SM-5L3FV 60-69 years, male 118.3
GTEX-1F6IF-3026-SM-7P8QN 60-69 years, male 118.3
GTEX-13CF2-3026-SM-5IFFX 60-69 years, male 117.5
GTEX-1QP6S-3026-SM-EAZ4N 40-49 years, male 117.2
GTEX-13JUV-3026-SM-5K7WX 40-49 years, female 117.1
GTEX-1IY9M-3126-SM-AHZ3A 60-69 years, male 116.7
GTEX-T2IS-2926-SM-32QPO 20-29 years, female 116.2
GTEX-ZZPT-2926-SM-5EQ5S 50-59 years, male 116.0
GTEX-Y8DK-0726-SM-4TT3S 60-69 years, male 115.7
GTEX-11O72-2826-SM-5HL6W 40-49 years, male 115.1
GTEX-12WSC-2926-SM-5BC5Z 50-59 years, male 115.0
GTEX-147GR-3126-SM-5S2PM 60-69 years, male 114.9
GTEX-1HBPH-3026-SM-9WPNY 40-49 years, female 114.6
GTEX-13O3O-3026-SM-5KM42 60-69 years, female 113.4
GTEX-17HII-2926-SM-79OMK 50-59 years, male 113.0
GTEX-11NV4-2226-SM-5BC4T 60-69 years, male 112.8
GTEX-11EMC-3326-SM-5P9JH 60-69 years, female 112.7
GTEX-S7SE-2526-SM-2XCDL 50-59 years, male 110.2
GTEX-13FHO-2926-SM-5L3ES 60-69 years, male 110.1
GTEX-14BMV-2926-SM-5TDEE 50-59 years, male 110.1
GTEX-1I1GV-3026-SM-CNNR9 60-69 years, male 109.9
GTEX-1POEN-2726-SM-E9U6B 30-39 years, female 109.8
GTEX-12126-0926-SM-5FQTW 20-29 years, male 109.7
GTEX-N7MS-2526-SM-2D7W3 60-69 years, male 109.5
GTEX-WWYW-3026-SM-3NB36 50-59 years, female 108.8
GTEX-147F4-3026-SM-5Q5BJ 50-59 years, male 108.7
GTEX-1GN73-3026-SM-7MXV8 60-69 years, male 108.5
GTEX-RU72-2926-SM-2TF66 50-59 years, female 107.6
GTEX-ZAJG-3026-SM-5HL92 50-59 years, female 107.1
GTEX-15G19-2826-SM-6M48K 60-69 years, male 106.0
GTEX-16Z82-2926-SM-6LPJJ 60-69 years, male 105.4
GTEX-1EMGI-3126-SM-7MXUR 60-69 years, male 105.3
GTEX-QDT8-3026-SM-32PKB 30-39 years, female 104.3
GTEX-ZAB4-2926-SM-57WCV 40-49 years, male 104.3
GTEX-13X6J-2926-SM-7EPGP 50-59 years, male 104.0
GTEX-1GF9W-2726-SM-9JGGW 60-69 years, male 104.0
GTEX-1I1HK-2726-SM-AHZ2M 60-69 years, male 103.9
GTEX-12WSE-2926-SM-5RQJ9 20-29 years, male 103.0
GTEX-1GZ2Q-3026-SM-9JGG3 40-49 years, male 103.0
GTEX-11TTK-2826-SM-5GU5K 60-69 years, female 102.8
GTEX-NPJ8-2626-SM-2D7W2 40-49 years, male 102.6
GTEX-ZUA1-2926-SM-59HL3 40-49 years, male 101.8
GTEX-11GSO-3026-SM-5Q5AL 60-69 years, male 101.7
GTEX-WZTO-2826-SM-3NM8P 40-49 years, male 100.8
GTEX-X4EP-3026-SM-3P5YP 60-69 years, female 100.7
GTEX-PVOW-2626-SM-32PL8 40-49 years, male 100.2
GTEX-1H1ZS-2926-SM-9WPP2 70-79 years, male 99.9
GTEX-RNOR-2226-SM-2TF5O 50-59 years, female 99.0
GTEX-14C5O-2926-SM-5RQI1 60-69 years, male 97.7
GTEX-QVUS-2926-SM-3GIJB 60-69 years, female 97.4
GTEX-13VXU-3026-SM-5LU3K 50-59 years, male 96.8
GTEX-QVJO-1325-SM-2S1QX 60-69 years, female 96.4
GTEX-1JJE9-3026-SM-CNNPA 70-79 years, male 94.2
GTEX-18A6Q-2826-SM-7LTAO 60-69 years, male 94.0
GTEX-1QEPI-3026-SM-EXOIW 60-69 years, female 94.0
GTEX-WHSE-2926-SM-3NMBG 20-29 years, male 92.3
GTEX-1269C-3126-SM-5EGI6 60-69 years, female 90.8
GTEX-1H3VE-2826-SM-9WPOL 40-49 years, male 90.5
GTEX-1HCVE-2926-SM-9WPPJ 50-59 years, male 88.4
GTEX-PWO3-1026-SM-2I5F2 60-69 years, female 88.2
GTEX-11OC5-0626-SM-5HL6M 60-69 years, male 88.1
GTEX-1F75W-3126-SM-7P8SJ 60-69 years, male 88.1
GTEX-139TS-3126-SM-5LZWX 60-69 years, male 87.9
GTEX-1JMOU-2826-SM-EV79R 60-69 years, female 87.5
GTEX-TSE9-2926-SM-3DB77 60-69 years, female 86.9
GTEX-1RNSC-3126-SM-EVR4V 60-69 years, male 86.9
GTEX-1E2YA-2926-SM-7MGWX 50-59 years, male 84.8
GTEX-11ZVC-3026-SM-59HJM 50-59 years, female 84.5
GTEX-1EH9U-3126-SM-7MXU5 60-69 years, male 83.9
GTEX-1F6I4-3026-SM-7P8SI 60-69 years, male 83.5
GTEX-R55E-2526-SM-2TC6H 20-29 years, male 80.7
GTEX-1CB4H-3026-SM-79OLX 60-69 years, female 79.2
GTEX-1BAJH-3126-SM-7MGXY 70-79 years, male 78.5
GTEX-QMR6-1326-SM-32PLB 50-59 years, male 76.7
GTEX-13X6K-2826-SM-5O9DS 60-69 years, female 75.1
GTEX-1H3NZ-2926-SM-9WPQ8 60-69 years, male 74.5
GTEX-P44H-2426-SM-2XCEJ 40-49 years, male 74.3
GTEX-1EWIQ-3026-SM-7IGOJ 70-79 years, female 69.8
GTEX-OHPN-2626-SM-2I5H1 60-69 years, female 69.8
GTEX-1H1CY-3026-SM-9OSW7 60-69 years, female 69.5
GTEX-P44G-2526-SM-2I5EK 30-39 years, male 66.5
GTEX-16XZZ-2926-SM-6LPK4 60-69 years, male 64.6
GTEX-14PJO-2926-SM-686ZI 60-69 years, male 61.0
GTEX-1PWST-3026-SM-EAZ3H 70-79 years, male 58.4
GTEX-ZF28-2926-SM-4WKG1 60-69 years, male 57.9
GTEX-NPJ7-2826-SM-2I3FU 60-69 years, female 55.9
GTEX-14A5I-2826-SM-5SIBF 50-59 years, female 47.5
Show allShow less

CEREBELLUM - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

219.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Cerebellum
Scaled Tags Per Million: 219.4
FF:10166-103B4 76 years, female 311.6
FF:10083-102B2 22-68 years, mixed 127.2

CEREBELLUM - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

3.1
Pig sample Sample description nTPM
Cerebellum
nTPM: 3.1
Samples: 4

Max nTPM: 7.7
Min nTPM: 0.9
Sample A Female 7.7
Sample B Female 1.8
Sample C Male 0.9
Sample D Male 1.9

CEREBELLUM - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

4.4
Mouse sample Sample description nTPM
Cerebellum
nTPM: 4.4
Samples: 4

Max nTPM: 5.2
Min nTPM: 4.0
Sample A Male 4.0
Sample B Male 5.2
Sample C Female 4.1
Sample D Female 4.3

CEREBELLUM - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

1.7
Allen experiment id Experiment description Expression energy
Cerebellum
Expression energy: 1.7
291 Antisense, RP_Baylor_102698, Mouse strain C57BL/6J (56 days, male) 3.0
290 Antisense, RP_Baylor_102698, Mouse strain C57BL/6J (56 days, male) 1.4
77869097 Antisense, RP_070129_02_G03, Mouse strain C57BL/6J (56 days, male) 0.4

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