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COL6A1
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TISSUE PRIMARY DATA OVARY Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Ovary
Tissue proteome
Ovary
OVARY - Expression summary
Protein expression
Ovaryi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Follicle cells: Not detected
Ovarian stroma cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:475.8 nTPM
HPA:355.4 nTPM
GTEx:475.8 nTPM
FANTOM5:710.0 Scaled Tags Per Million

OVARY - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA019142Antibody HPA029401
Follicle cells -Not detected
Ovarian stroma cells MediumNot detected





OVARY - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

355.4
overview
Female, age 64
Ovary sample 192
nTPM: 237.3
Cell types%
Stromal cells:
70

Smooth muscle cells:
15

Other cell types:
15

overview
Female, age 52
Ovary sample 193
nTPM: 389.1
Cell types%
Stromal cells:
95

Other cell types:
5

overview
Female, age 80
Ovary sample 308
nTPM: 112.9
Cell types%
Stromal cells:
70

Smooth muscle cells:
25

Other cell types:
5

N/A
Female, age 7
Ovary sample 3662
nTPM: 383.9
N/A
Female, age 16
Ovary sample 3663
nTPM: 216.1
N/A
Female, age 20
Ovary sample 3664
nTPM: 460.1
N/A
Female, age 32
Ovary sample 3665
nTPM: 688.6

OVARY - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

475.8
GTEx sample id Sample description nTPM
Ovary
Average nTPM: 475.8
Samples: 180

Max nTPM: 1021.7
Min nTPM: 176.5
Std nTPM: 159.1
Median nTPM: 466.5
GTEX-T5JW-0426-SM-4DM7M 20-29 years, female 1021.7
GTEX-UJHI-1226-SM-4IHLR 50-59 years, female 995.7
GTEX-XUZC-1026-SM-4BOPY 30-39 years, female 982.2
GTEX-ZP4G-0626-SM-4WWF1 20-29 years, female 975.3
GTEX-12WSJ-1226-SM-5LU91 40-49 years, female 901.8
GTEX-PWN1-2426-SM-48TDD 40-49 years, female 875.0
GTEX-1LGOU-1026-SM-DHXL4 20-29 years, female 869.7
GTEX-14JG6-0626-SM-68716 30-39 years, female 820.6
GTEX-S341-0726-SM-4AD5R 40-49 years, female 802.8
GTEX-1R9PN-0626-SM-E6CR9 40-49 years, female 797.2
GTEX-XYKS-1726-SM-4E3IO 60-69 years, female 762.0
GTEX-WXYG-1426-SM-4ONCK 50-59 years, female 740.2
GTEX-13O3O-2726-SM-5KM35 60-69 years, female 704.0
GTEX-12WSK-1926-SM-5LZVK 40-49 years, female 700.4
GTEX-1HSGN-2426-SM-C1YRI 40-49 years, female 688.3
GTEX-X8HC-2726-SM-46MUA 50-59 years, female 675.1
GTEX-14PKU-1226-SM-686ZM 40-49 years, female 665.7
GTEX-QCQG-1426-SM-48U22 50-59 years, female 663.5
GTEX-ZLWG-0926-SM-4WWC3 50-59 years, female 655.0
GTEX-1AMFI-1426-SM-731EL 50-59 years, female 642.7
GTEX-ZYFG-1726-SM-5GZZB 60-69 years, female 634.2
GTEX-13VXT-1526-SM-5LU3J 20-29 years, female 631.3
GTEX-TML8-0926-SM-4DXSJ 40-49 years, female 629.4
GTEX-1GN1W-1426-SM-9JGHP 50-59 years, female 624.2
GTEX-1PBJI-2026-SM-DPRYF 20-29 years, female 611.5
GTEX-17JCI-2326-SM-7IGPC 60-69 years, female 610.5
GTEX-11P81-1526-SM-5P9GS 30-39 years, female 608.7
GTEX-PWCY-1326-SM-48TCU 20-29 years, female 608.2
GTEX-1PIEJ-1626-SM-E6CP9 20-29 years, female 601.0
GTEX-1QEPI-2726-SM-DPRZ6 60-69 years, female 598.3
GTEX-1LNCM-0926-SM-DHXK5 50-59 years, female 596.9
GTEX-ZVT2-0326-SM-5E44G 50-59 years, female 591.9
GTEX-1KANC-1026-SM-D3LAA 50-59 years, female 588.4
GTEX-ZZPU-2126-SM-5EGIU 50-59 years, female 587.4
GTEX-S4P3-0926-SM-4AD54 50-59 years, female 587.3
GTEX-1LVAM-1826-SM-DHXKR 50-59 years, female 579.4
GTEX-13QBU-1526-SM-5LU3W 40-49 years, female 577.9
GTEX-OHPL-2426-SM-48TDN 60-69 years, female 577.6
GTEX-1IDJE-1126-SM-A96SO 50-59 years, female 574.7
GTEX-1JN76-1426-SM-AHZ4F 20-29 years, female 573.6
GTEX-RU1J-0826-SM-46MUU 20-29 years, female 566.8
GTEX-11I78-1926-SM-59878 50-59 years, female 565.5
GTEX-1313W-2726-SM-5P9IX 50-59 years, female 565.1
GTEX-ZVT3-2626-SM-5GU5L 60-69 years, female 563.4
GTEX-X15G-1726-SM-4PQZN 50-59 years, female 562.4
GTEX-POMQ-1426-SM-3P61D 20-29 years, female 560.9
GTEX-14PJM-2426-SM-686ZC 50-59 years, female 560.7
GTEX-14DAQ-2226-SM-5YYAD 60-69 years, female 560.3
GTEX-QDT8-2226-SM-EZ6LT 30-39 years, female 558.2
GTEX-14PKV-1226-SM-6871T 20-29 years, female 556.7
GTEX-YFC4-2726-SM-5IFJW 40-49 years, female 553.7
GTEX-11VI4-1026-SM-5EQM1 40-49 years, female 552.2
GTEX-1HBPH-2726-SM-A96TW 40-49 years, female 547.9
GTEX-XUW1-0126-SM-4BOOQ 50-59 years, female 540.6
GTEX-15ER7-2326-SM-7KUN3 20-29 years, female 540.2
GTEX-1OJC4-2026-SM-E6CQW 50-59 years, female 536.3
GTEX-131YS-2226-SM-5P9G8 60-69 years, female 535.6
GTEX-W5WG-0926-SM-4RTX9 50-59 years, female 529.1
GTEX-13W3W-1526-SM-5LU5I 60-69 years, female 527.9
GTEX-P4QT-2426-SM-3NMCL 50-59 years, female 522.7
GTEX-15DYW-2626-SM-6LPK7 60-69 years, female 521.5
GTEX-1ICG6-1526-SM-C1YQT 70-79 years, female 520.8
GTEX-RWS6-1026-SM-47JXD 60-69 years, female 515.5
GTEX-11DXX-1426-SM-5GIDU 60-69 years, female 512.0
GTEX-TMMY-1726-SM-4DXTD 40-49 years, female 511.4
GTEX-Y114-1726-SM-4TT7U 50-59 years, female 510.6
GTEX-14BIN-1426-SM-664NI 50-59 years, female 506.4
GTEX-RTLS-2326-SM-46MUH 60-69 years, female 504.4
GTEX-145ME-1226-SM-5SIB6 40-49 years, female 501.1
GTEX-14AS3-1326-SM-5RQJE 40-49 years, female 499.3
GTEX-1QPFJ-1726-SM-EXOJU 30-39 years, female 498.5
GTEX-XMD3-2326-SM-4AT5H 50-59 years, female 496.8
GTEX-1CAMS-2126-SM-7MXTF 40-49 years, female 492.5
GTEX-PLZ4-2826-SM-3P617 50-59 years, female 491.4
GTEX-1K9T9-2426-SM-DHXKT 50-59 years, female 489.4
GTEX-12WSD-2726-SM-59HLR 60-69 years, female 487.8
GTEX-1EWIQ-2226-SM-7MGXJ 70-79 years, female 486.2
GTEX-1QP28-1326-SM-DPRXZ 50-59 years, female 483.9
GTEX-145LS-2326-SM-5TDCY 60-69 years, female 483.7
GTEX-1F5PL-1626-SM-7MXTY 40-49 years, female 483.5
GTEX-PX3G-2426-SM-48TZZ 20-29 years, female 480.3
GTEX-QVJO-3126-SM-COH22 60-69 years, female 479.1
GTEX-18D9A-0826-SM-718C1 30-39 years, female 476.8
GTEX-11XUK-1626-SM-5GU5O 40-49 years, female 476.7
GTEX-12ZZX-2026-SM-5LZV9 40-49 years, female 475.6
GTEX-13QIC-1526-SM-5IJFL 60-69 years, female 475.4
GTEX-T2IS-2026-SM-4DM6W 20-29 years, female 474.7
GTEX-T6MO-1126-SM-4DM5D 40-49 years, female 474.0
GTEX-1F52S-2226-SM-7MXVE 60-69 years, female 470.2
GTEX-1J1OQ-1626-SM-CE6TB 40-49 years, female 467.7
GTEX-14PN3-1526-SM-6ETZM 60-69 years, female 465.3
GTEX-1I4MK-1526-SM-CE6T1 50-59 years, female 460.3
GTEX-1MA7W-1426-SM-EV7A1 20-29 years, female 455.9
GTEX-16NGA-0426-SM-7LG6K 40-49 years, female 453.8
GTEX-1H1CY-1926-SM-9WG7X 60-69 years, female 453.7
GTEX-1IKOE-2326-SM-A8N99 30-39 years, female 451.9
GTEX-13D11-1126-SM-5KLYS 50-59 years, female 446.8
GTEX-13X6H-1026-SM-5SIBE 50-59 years, female 444.3
GTEX-13PVR-1226-SM-5RQJ2 60-69 years, female 443.9
GTEX-1B933-2126-SM-7MGXR 50-59 years, female 437.3
GTEX-ZPIC-1426-SM-4WWCP 40-49 years, female 435.7
GTEX-P78B-1926-SM-3P616 40-49 years, female 431.5
GTEX-1LKK1-1626-SM-EVR4Y 50-59 years, female 430.9
GTEX-1C475-0426-SM-7P8OU 40-49 years, female 428.6
GTEX-13SLX-2426-SM-664OM 50-59 years, female 425.8
GTEX-1A32A-2726-SM-73KVU 50-59 years, female 423.1
GTEX-11ZTT-1826-SM-5CVLN 60-69 years, female 422.0
GTEX-1AMEY-0926-SM-72D6G 30-39 years, female 419.5
GTEX-1IDJU-1126-SM-A9G2S 60-69 years, female 419.5
GTEX-Y3IK-2026-SM-4YCDG 50-59 years, female 418.0
GTEX-15FZZ-0826-SM-6LLJO 30-39 years, female 416.8
GTEX-Q734-0726-SM-48TZP 40-49 years, female 415.3
GTEX-11EM3-1726-SM-5N9D1 20-29 years, female 414.0
GTEX-1269C-1826-SM-5N9E1 60-69 years, female 413.8
GTEX-WEY5-0626-SM-4LMIA 40-49 years, female 412.1
GTEX-SN8G-2426-SM-EVR31 50-59 years, female 409.5
GTEX-WYVS-1526-SM-4OND4 40-49 years, female 405.9
GTEX-13PL7-2326-SM-5L3FY 60-69 years, female 404.4
GTEX-131XG-1926-SM-5LZVG 50-59 years, female 403.3
GTEX-1HCUA-1326-SM-9WPP6 50-59 years, female 402.6
GTEX-133LE-1226-SM-5IFGC 20-29 years, female 402.5
GTEX-YJ8O-1026-SM-5CVM5 40-49 years, female 396.7
GTEX-1GF9X-2426-SM-7SB7W 40-49 years, female 396.6
GTEX-U3ZN-1026-SM-4DXTC 30-39 years, female 394.0
GTEX-15UF6-2026-SM-6LPI3 70-79 years, female 391.6
GTEX-1J8JJ-0826-SM-AHZ3F 60-69 years, female 391.2
GTEX-13OVJ-2426-SM-5KM3I 50-59 years, female 384.8
GTEX-TSE9-2226-SM-4DXUR 60-69 years, female 384.2
GTEX-ZC5H-2026-SM-5CVN2 40-49 years, female 383.8
GTEX-1S5ZU-2326-SM-EAZ5B 20-29 years, female 380.5
GTEX-11GSP-0226-SM-5A5KV 60-69 years, female 376.9
GTEX-146FH-2526-SM-5Q5BP 50-59 years, female 373.6
GTEX-15EOM-1526-SM-68723 20-29 years, female 372.6
GTEX-OHPK-2426-SM-3MJGH 50-59 years, female 372.4
GTEX-14BMU-1726-SM-5TDE8 20-29 years, female 369.9
GTEX-S7SF-1326-SM-4AD4P 20-29 years, female 367.5
GTEX-R55G-1526-SM-48FER 40-49 years, female 362.5
GTEX-11ZVC-1426-SM-5EGGA 50-59 years, female 361.7
GTEX-RU72-2226-SM-46MUE 50-59 years, female 357.8
GTEX-WYBS-2426-SM-4ONDI 60-69 years, female 357.0
GTEX-X4EO-2426-SM-4QASD 60-69 years, female 352.0
GTEX-13OVI-0726-SM-5L3DD 60-69 years, female 349.1
GTEX-13FTX-0926-SM-5IFF7 20-29 years, female 347.0
GTEX-1RDX4-0826-SM-E9TK7 50-59 years, female 344.8
GTEX-13U4I-2126-SM-5LU55 40-49 years, female 340.6
GTEX-P4PP-2426-SM-3P61L 30-39 years, female 339.9
GTEX-15SDE-0926-SM-6LPIA 50-59 years, female 330.9
GTEX-1LGRB-2326-SM-CNNPU 50-59 years, female 330.8
GTEX-139D8-2426-SM-5KM3A 30-39 years, female 330.0
GTEX-18A7A-2626-SM-7LG6L 50-59 years, female 325.4
GTEX-ZAJG-2726-SM-5S2MU 50-59 years, female 323.6
GTEX-13N11-0526-SM-5IJFI 50-59 years, female 321.4
GTEX-ZV6S-1426-SM-59HKX 40-49 years, female 319.8
GTEX-XV7Q-1426-SM-4BRWA 40-49 years, female 318.0
GTEX-1F88E-2026-SM-7MXVP 60-69 years, female 312.2
GTEX-1QP67-1526-SM-E76P4 40-49 years, female 308.2
GTEX-WI4N-2526-SM-4OOSE 40-49 years, female 305.3
GTEX-1399U-1726-SM-5P9J4 50-59 years, female 302.3
GTEX-11EMC-1726-SM-5H11P 60-69 years, female 296.8
GTEX-12WSG-1426-SM-5FQUK 50-59 years, female 293.7
GTEX-15DDE-2326-SM-6AJA8 50-59 years, female 289.3
GTEX-ZYY3-2726-SM-5EGH4 60-69 years, female 289.2
GTEX-1MCC2-1026-SM-EVR5I 30-39 years, female 284.4
GTEX-1399S-2126-SM-5J2MH 30-39 years, female 274.9
GTEX-1LVAN-2726-SM-CNPQG 50-59 years, female 273.0
GTEX-1F88F-2126-SM-9KNUK 60-69 years, female 256.4
GTEX-1JN1M-2126-SM-D4P2X 60-69 years, female 254.7
GTEX-183WM-1926-SM-72D5F 70-79 years, female 253.9
GTEX-1GZHY-2426-SM-9JGGK 50-59 years, female 252.3
GTEX-16MT8-2226-SM-6LPK2 60-69 years, female 250.5
GTEX-1F6RS-2726-SM-7MKHA 60-69 years, female 250.4
GTEX-WWYW-2726-SM-4MVOP 50-59 years, female 249.3
GTEX-1GN1U-2326-SM-9MQK4 50-59 years, female 249.2
GTEX-145MI-2626-SM-5QGQ8 60-69 years, female 248.4
GTEX-1F48J-2326-SM-7MKG3 50-59 years, female 243.0
GTEX-S32W-1226-SM-4AD67 50-59 years, female 242.8
GTEX-1A8FM-2226-SM-7PC1C 50-59 years, female 242.1
GTEX-11ZTS-1926-SM-5CVLA 60-69 years, female 227.5
GTEX-1H2FU-2326-SM-9WG7R 60-69 years, female 224.9
GTEX-132AR-1426-SM-5IFF1 50-59 years, female 176.5
Show allShow less

OVARY - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

710.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Ovary
Scaled Tags Per Million: 710.0
FF:10020-101D2 47,75,84 years, female 710.0

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