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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:275.5 nTPM
GTEx:275.5 nTPM
FANTOM5:520.5 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA019142Antibody HPA029401
Squamous epithelial cells Not detectedNot detected



VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

275.5
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 275.5
Samples: 156

Max nTPM: 901.4
Min nTPM: 33.1
Std nTPM: 164.7
Median nTPM: 244.2
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 901.4
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 757.5
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 692.2
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 646.7
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 638.5
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 599.9
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 559.3
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 557.1
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 547.6
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 546.4
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 540.4
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 534.1
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 512.9
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 510.8
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 507.8
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 497.9
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 495.5
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 487.0
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 483.1
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 483.0
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 477.5
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 474.7
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 472.8
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 462.6
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 460.3
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 458.2
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 457.7
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 447.8
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 443.5
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 435.6
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 429.2
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 416.3
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 409.5
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 396.5
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 390.8
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 388.3
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 382.2
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 373.3
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 373.2
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 372.7
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 370.9
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 369.1
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 368.1
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 367.4
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 362.2
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 358.2
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 355.9
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 352.1
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 340.1
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 334.3
GTEX-QCQG-1226-SM-48U23 50-59 years, female 332.7
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 323.9
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 323.3
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 320.0
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 319.0
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 314.4
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 313.2
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 311.9
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 311.0
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 309.5
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 308.8
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 308.7
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 302.7
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 301.9
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 298.7
GTEX-16NPV-2526-SM-6M483 50-59 years, female 298.6
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 296.7
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 296.3
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 290.7
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 287.1
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 284.0
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 276.2
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 275.3
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 273.3
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 268.4
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 263.0
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 252.1
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 246.1
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 242.2
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 235.5
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 234.5
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 231.5
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 222.9
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 221.1
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 219.1
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 214.8
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 213.3
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 209.6
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 209.6
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 208.1
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 207.7
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 202.3
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 198.0
GTEX-1C475-0526-SM-793AC 40-49 years, female 196.1
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 195.2
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 193.6
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 192.2
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 189.2
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 187.3
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 185.8
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 185.4
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 180.7
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 178.9
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 177.8
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 176.3
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 175.8
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 175.2
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 174.1
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 169.0
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 168.8
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 166.5
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 159.1
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 155.2
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 154.7
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 150.3
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 145.9
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 145.3
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 140.2
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 136.9
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 134.8
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 130.2
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 128.5
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 126.0
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 124.3
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 120.7
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 119.8
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 118.9
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 117.1
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 114.6
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 113.2
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 112.8
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 112.5
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 109.0
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 106.8
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 105.9
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 102.7
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 102.4
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 96.5
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 91.3
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 85.3
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 82.9
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 82.2
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 80.2
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 77.1
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 73.9
GTEX-14PKU-1326-SM-6871B 40-49 years, female 72.6
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 66.6
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 63.2
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 57.9
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 57.6
GTEX-S341-1226-SM-4AD5S 40-49 years, female 50.5
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 42.9
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 42.3
GTEX-11I78-2026-SM-5987C 50-59 years, female 41.7
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 38.6
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 33.1
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

520.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 520.5
FF:10204-103F6 68 years, female 520.5

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