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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:527.5 nTPM
HPA Brain:263.8 nTPM
GTEx:527.5 nTPM
FANTOM5:577.9 Scaled Tags Per Million
Pig:68.1 nTPM
Mouse:593.2 nTPM
Allen mouse:8.0 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

263.8
Sample id Sample description nTPM
Amygdala
nTPM: 263.8
2814 Male, age 76, right hemisphere 309.3
2514 Male, age 75, right hemisphere 300.4
1987 Female, age 91, left hemisphere 270.0
2695 Female, age 67, right hemisphere 230.5
2517 Female, age 94, left hemisphere 208.7
Basal amygdala
nTPM: 209.6
2609 Male, age 75, right hemisphere 269.1
1955 Male, age 76, both hemispheres 238.5
2110 Male, age 80, left hemisphere 230.3
2243 Female, age 91, right hemisphere 227.9
2685 Female, age 94, left hemisphere 170.7
2827 Female, age 67, right hemisphere 121.4
Central amygdala
nTPM: 230.2
1905 Male, age 76, both hemispheres 289.7
2515 Male, age 75, right hemisphere 236.8
2701 Female, age 91, right hemisphere 219.8
2239 Male, age 80, left hemisphere 212.6
2826 Female, age 94, left hemisphere 192.0
Corticomedial amygdala
nTPM: 215.9
2428 Male, age 75, right hemisphere 283.4
2829 Male, age 80, left hemisphere 241.4
2240 Male, age 76, both hemispheres 217.5
2242 Female, age 91, right hemisphere 214.4
2429 Female, age 94, left hemisphere 211.9
2535 Female, age 67, right hemisphere 126.5
Lateral amygdala
nTPM: 199.3
1883 Male, age 76, both hemispheres 299.3
2516 Male, age 75, right hemisphere 234.3
2534 Female, age 94, left hemisphere 196.9
2255 Female, age 91, right hemisphere 166.7
2256 Male, age 80, left hemisphere 163.7
2830 Female, age 67, right hemisphere 135.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

527.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 527.5
Samples: 152

Max nTPM: 1276.8
Min nTPM: 175.0
Std nTPM: 176.1
Median nTPM: 502.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1276.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1232.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 1121.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1068.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1052.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1049.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 902.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 856.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 796.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 761.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 746.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 744.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 732.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 720.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 714.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 712.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 710.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 702.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 700.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 699.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 690.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 687.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 675.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 674.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 672.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 670.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 669.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 650.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 643.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 642.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 633.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 624.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 621.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 621.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 616.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 603.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 591.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 588.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 585.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 578.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 578.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 575.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 573.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 570.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 567.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 567.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 567.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 567.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 567.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 563.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 563.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 560.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 552.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 549.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 548.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 541.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 534.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 532.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 531.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 528.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 525.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 524.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 523.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 523.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 520.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 520.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 520.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 516.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 514.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 512.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 512.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 512.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 506.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 505.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 505.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 504.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 501.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 488.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 487.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 485.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 477.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 476.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 472.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 472.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 470.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 468.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 467.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 466.5
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 466.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 464.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 462.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 462.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 461.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 460.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 459.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 456.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 455.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 452.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 449.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 448.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 444.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 437.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 433.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 431.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 431.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 430.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 430.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 428.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 425.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 423.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 422.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 422.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 421.6
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 421.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 421.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 412.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 411.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 410.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 406.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 406.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 403.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 401.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 396.0
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 395.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 386.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 386.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 381.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 373.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 372.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 370.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 362.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 362.2
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 360.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 356.7
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 355.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 352.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 348.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 346.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 345.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 342.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 340.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 336.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 336.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 332.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 327.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 324.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 311.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 308.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 297.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 282.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 276.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 175.0
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

577.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 577.9
FF:10151-102I7 76 years, female 577.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

68.1
Pig sample Sample description nTPM
Amygdala
nTPM: 68.1
Samples: 4

Max nTPM: 95.0
Min nTPM: 55.2
Sample A Female 95.0
Sample B Female 61.2
Sample C Male 60.9
Sample D Male 55.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

593.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 593.2
Samples: 4

Max nTPM: 623.7
Min nTPM: 559.4
Sample A Male 613.0
Sample B Male 576.8
Sample C Female 623.7
Sample D Female 559.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

8.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 8.0
79587726 Antisense, RP_071204_02_D06, Mouse strain C57BL/6J (56 days, male) 13.0
79749602 Antisense, RP_071204_02_D06, Mouse strain C57BL/6J (56 days, male) 8.5
994 Antisense, RP_Baylor_103044, Mouse strain C57BL/6J (56 days, male) 3.0

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