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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:430.0 nTPM
FANTOM5:872.3 Scaled Tags Per Million
Pig:495.4 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA001462Antibody CAB000157
Glial cells LowLow
Neuronal cells MediumMedium





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

430.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 430.0
Samples: 246

Max nTPM: 718.1
Min nTPM: 216.7
Std nTPM: 119.1
Median nTPM: 416.1
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 718.1
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 703.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 701.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 699.0
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 684.5
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 680.7
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 678.9
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 675.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 673.1
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 672.5
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 665.9
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 663.0
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 662.2
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 651.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 651.2
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 647.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 639.4
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 636.3
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 630.8
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 608.6
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 605.9
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 605.5
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 604.7
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 602.9
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 601.9
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 601.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 599.2
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 591.3
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 587.3
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 581.7
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 580.7
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 580.5
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 580.2
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 578.9
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 577.1
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 575.7
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 571.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 567.4
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 566.4
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 563.9
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 562.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 557.2
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 556.8
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 556.7
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 554.6
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 554.3
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 554.0
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 551.0
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 546.8
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 536.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 532.9
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 530.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 528.8
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 525.9
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 520.4
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 514.6
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 512.4
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 512.0
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 511.9
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 510.2
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 509.0
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 508.3
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 505.5
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 503.1
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 499.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 497.3
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 496.6
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 496.6
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 495.3
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 495.1
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 494.7
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 492.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 492.0
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 489.7
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 489.3
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 482.0
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 481.9
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 481.9
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 481.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 480.2
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 479.8
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 476.8
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 474.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 474.1
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 474.1
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 472.5
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 469.4
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 467.0
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 462.9
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 462.1
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 461.9
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 461.8
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 461.5
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 460.6
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 458.0
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 456.0
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 455.7
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 454.3
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 454.3
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 452.1
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 451.7
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 449.5
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 448.8
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 448.3
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 443.2
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 443.0
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 442.3
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 440.0
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 439.8
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 439.7
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 439.2
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 434.9
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 431.8
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 431.5
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 431.5
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 431.2
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 426.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 421.4
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 420.2
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 420.2
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 417.6
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 417.4
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 416.1
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 416.0
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 415.7
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 415.4
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 412.6
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 412.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 410.9
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 409.8
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 403.7
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 403.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 401.3
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 399.9
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 398.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 397.8
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 397.1
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 397.0
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 396.6
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 395.0
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 394.7
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 392.7
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 390.5
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 389.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 389.3
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 389.0
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 386.3
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 382.8
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 381.7
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 381.4
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 380.9
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 378.7
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 378.1
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 375.9
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 373.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 372.1
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 371.6
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 370.5
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 370.0
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 366.6
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 365.8
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 365.8
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 365.7
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 365.4
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 362.9
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 361.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 360.8
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 357.3
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 356.5
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 356.5
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 356.1
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 353.8
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 351.6
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 349.8
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 349.6
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 346.1
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 344.3
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 342.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 341.8
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 341.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 341.2
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 340.6
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 337.2
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 337.2
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 336.9
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 336.5
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 333.0
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 332.6
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 332.2
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 330.9
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 328.9
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 328.8
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 328.1
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 326.3
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 324.5
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 322.1
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 321.9
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 319.6
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 318.1
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 314.0
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 313.3
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 311.1
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 311.0
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 309.5
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 306.3
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 305.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 304.8
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 303.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 301.2
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 300.3
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 299.2
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 298.7
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 298.6
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 294.7
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 294.6
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 294.1
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 293.8
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 292.6
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 289.8
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 284.6
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 279.6
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 279.4
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 279.0
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 274.0
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 272.4
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 270.6
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 266.9
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 265.3
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 263.9
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 261.7
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 261.3
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 259.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 258.7
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 257.9
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 251.7
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 249.4
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 248.9
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 248.1
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 246.1
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 244.8
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 244.3
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 241.0
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 238.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 235.6
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 229.3
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 216.7
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

872.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 872.3
FF:10164-103B2 76 years, female 872.3

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

495.4
Pig sample Sample description nTPM
Caudate
nTPM: 495.4
Samples: 4

Max nTPM: 573.7
Min nTPM: 445.4
Sample A Female 445.4
Sample B Female 469.7
Sample C Male 573.7
Sample D Male 492.8

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