MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:463.1 nTPM
HPA Brain:879.4 nTPM
GTEx:463.1 nTPM
FANTOM5:813.3 Scaled Tags Per Million
Pig:756.2 nTPM
Mouse:939.9 nTPM
Allen mouse:19.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 879.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 654.0
2666 Male, age 74, left hemisphere 776.9
2411 Female, age 72, unknown 722.3
1827 Male, age 72, unknown 705.8
1870 Female, age 42, unknown 693.2
2019 Male, age 18, unknown 675.1
1833 Male, age 53, unknown 652.9
2828 Female, age 72, unknown 652.0
1830 Male, age 51, unknown 605.1
2219 Male, age 76, both hemispheres 553.8
2586 Male, age 75, left hemisphere 502.9
Dorsal raphe nucleus
nTPM: 695.1
2298 Female, age 72, unknown 798.2
2047 Male, age 72, unknown 784.9
2750 Male, age 76, both hemispheres 739.8
1828 Male, age 53, unknown 626.5
2016 Female, age 72, unknown 526.4
Inferior colliculus
nTPM: 598.7
2097 Female, age 72, unknown 668.6
1890 Male, age 53, unknown 582.6
2849 Male, age 72, unknown 572.0
1848 Female, age 42, unknown 571.5
Median raphe nucleus
nTPM: 879.4
2220 Male, age 76, midline 879.4
Periaquaductal grey, anterior
nTPM: 673.3
2502 Female, age 75, unknown 801.5
1795 Male, age 51, unknown 633.4
1947 Male, age 18, unknown 585.0
Periaquaductal grey, dorsal
nTPM: 557.3
2464 Female, age 72, unknown 570.2
2850 Male, age 76, both hemispheres 563.9
1831 Male, age 72, unknown 547.7
1840 Male, age 53, unknown 547.4
Periaquaductal grey, lateral
nTPM: 604.0
2272 Male, age 74, both hemispheres 672.1
2053 Male, age 18, unknown 606.5
2140 Male, age 76, both hemispheres 533.3
Pretectal area
nTPM: 699.9
1944 Female, age 72, unknown 876.3
1816 Male, age 51, unknown 832.8
2007 Male, age 72, unknown 782.7
1817 Female, age 42, unknown 768.6
1815 Male, age 53, unknown 765.6
2667 Female, age 75, unknown 682.4
2273 Male, age 74, both hemispheres 645.2
2224 Female, age 72, unknown 632.0
2407 Male, age 75, both hemispheres 625.8
2825 Male, age 18, unknown 562.2
2316 Male, age 76, right hemisphere 524.9
Red nucleus
nTPM: 651.5
2785 Male, age 18, unknown 740.1
1904 Male, age 53, unknown 708.8
2503 Female, age 72, unknown 697.6
1821 Female, age 72, unknown 687.7
2725 Female, age 75, unknown 685.6
1865 Male, age 51, unknown 654.3
2588 Male, age 74, left hemisphere 654.2
1954 Female, age 42, unknown 633.1
2584 Male, age 75, left hemisphere 617.5
2227 Male, age 72, unknown 597.3
2769 Male, age 72, unknown 594.9
2823 Male, age 76, right hemisphere 547.0
Substantia nigra
nTPM: 623.8
1889 Female, age 72, unknown 760.5
1916 Female, age 42, unknown 740.5
1851 Male, age 51, unknown 676.5
1941 Male, age 53, unknown 664.4
2699 Male, age 18, unknown 613.2
2583 Male, age 75, right hemisphere 581.5
2590 Female, age 75, unknown 569.9
2409 Female, age 72, unknown 554.6
2665 Male, age 74, both hemispheres 540.3
2241 Male, age 72, unknown 536.2
Superior colliculus
nTPM: 651.7
2261 Male, age 18, unknown 764.1
2587 Male, age 74, left hemisphere 744.7
2087 Female, age 72, unknown 721.8
1913 Female, age 42, unknown 698.9
1796 Male, age 53, unknown 695.0
1995 Male, age 72, unknown 667.5
1895 Male, age 76, right hemisphere 610.3
1839 Male, age 51, unknown 591.2
2668 Female, age 75, unknown 559.7
2664 Male, age 75, both hemispheres 464.0
Ventral tegmental area
nTPM: 637.7
2410 Female, age 72, unknown 702.0
2218 Male, age 76, both hemispheres 685.2
2223 Female, age 72, unknown 681.4
1915 Female, age 42, unknown 651.7
1942 Male, age 51, unknown 589.6
2021 Male, age 53, unknown 516.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 463.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 463.1
Samples: 139

Max nTPM: 1073.0
Min nTPM: 270.8
Std nTPM: 121.1
Median nTPM: 435.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 1073.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 837.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 740.4
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 729.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 714.8
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 699.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 691.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 682.9
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 668.7
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 655.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 630.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 813.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 813.3
FF:10158-103A5 76 years, female 813.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 756.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 572.4
Samples: 4

Max nTPM: 665.1
Min nTPM: 470.9
Sample A Female 665.1
Sample B Female 470.9
Sample C Male 602.8
Sample D Male 550.8
Midbrain
nTPM: 756.2
Samples: 4

Max nTPM: 1236.9
Min nTPM: 449.8
Sample A Female 723.3
Sample B Female 449.8
Sample C Male 1236.9
Sample D Male 614.8
Periaqueductal gray
nTPM: 396.6
Samples: 3

Max nTPM: 433.8
Min nTPM: 340.2
Sample B Female 415.9
Sample C Male 433.8
Sample D Male 340.2
Superior colliculi
nTPM: 694.8
Samples: 4

Max nTPM: 829.1
Min nTPM: 596.3
Sample A Female 695.9
Sample B Female 657.9
Sample C Male 829.1
Sample D Male 596.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 939.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 940.0
Samples: 4

Max nTPM: 1001.1
Min nTPM: 874.4
Sample A Male 874.4
Sample B Male 931.0
Sample C Female 1001.1
Sample D Female 953.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 19.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 19.0
79591705 Antisense, RP_071218_02_B09, Mouse strain C57BL/6J (56 days, male) 30.6
106 Antisense, RP_Baylor_253875, Mouse strain C57BL/6J (56 days, male) 26.2
107 Antisense, RP_Baylor_253875, Mouse strain C57BL/6J (56 days, male) 21.6
70611467 Antisense, RP_050630_03_C12, Mouse strain C57BL/6J (56 days, male) 0.0

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