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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Endocrine cells: Not detected
Enterocytes: Not detected
Enterocytes - Microvilli: Not detected
Goblet cells: Not detected
Paneth cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:190.2 nTPM
HPA:190.2 nTPM
GTEx:159.4 nTPM
FANTOM5:382.3 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA001462Antibody CAB000157
Endocrine cells -Not detected
Enterocytes -Not detected
Enterocytes - Microvilli -Not detected
Glandular cells Medium-
Goblet cells -Not detected
Paneth cells -Not detected



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

190.2
overview
Male, age 65
Small intestine sample 232
nTPM: 179
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 167.3
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 213.5
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 200.8

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

159.4
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 159.4
Samples: 187

Max nTPM: 355.8
Min nTPM: 62.3
Std nTPM: 55.6
Median nTPM: 159.4
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 355.8
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 302.3
GTEX-1192X-2526-SM-59868 50-59 years, male 292.4
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 274.0
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 273.4
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 265.7
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 262.2
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 260.2
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 258.2
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 257.4
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 256.9
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 250.4
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 245.5
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 245.4
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 244.4
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 243.1
GTEX-117YX-0326-SM-5GICL 50-59 years, male 241.1
GTEX-111YS-1426-SM-5GID8 60-69 years, male 238.5
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 237.7
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 232.3
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 230.6
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 227.0
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 225.0
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 224.8
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 223.7
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 222.5
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 221.0
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 218.3
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 215.7
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 212.9
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 210.9
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 210.4
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 209.7
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 209.1
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 208.6
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 207.0
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 205.7
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 204.6
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 204.5
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 202.2
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 202.1
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 200.6
GTEX-13113-1226-SM-5EGHT 60-69 years, female 200.0
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 199.3
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 199.3
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 197.7
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 197.1
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 196.8
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 196.6
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 195.6
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 195.4
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 195.2
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 191.7
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 190.9
GTEX-1122O-1326-SM-5H11F 60-69 years, female 189.5
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 189.0
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 188.1
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 186.2
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 186.1
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 185.5
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 185.1
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 185.0
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 184.4
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 184.2
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 183.9
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 182.9
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 181.5
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 181.4
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 180.2
GTEX-13111-1426-SM-5DUW3 50-59 years, male 180.1
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 179.8
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 179.1
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 178.3
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 178.2
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 177.7
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 177.6
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 177.0
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 173.7
GTEX-14PN3-2026-SM-68729 60-69 years, female 173.0
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 172.7
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 172.4
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 169.8
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 168.6
GTEX-ZTSS-0926-SM-59865 40-49 years, male 168.0
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 167.9
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 167.3
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 167.2
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 166.9
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 166.8
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 162.7
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 162.0
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 159.8
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 159.7
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 159.4
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 159.1
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 157.4
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 156.6
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 155.0
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 150.0
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 149.8
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 148.8
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 148.2
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 147.4
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 147.3
GTEX-YFCO-1326-SM-664NV 40-49 years, male 145.6
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 145.4
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 145.1
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 144.8
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 143.5
GTEX-1C475-1426-SM-793CH 40-49 years, female 142.7
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 141.7
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 137.1
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 136.9
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 136.3
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 136.2
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 136.1
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 132.1
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 131.6
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 130.6
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 130.5
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 127.8
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 127.3
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 125.6
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 125.4
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 125.0
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 123.1
GTEX-14PKU-1626-SM-6871C 40-49 years, female 122.6
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 122.1
GTEX-14PK6-1626-SM-6871I 70-79 years, female 121.4
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 120.9
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 120.5
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 120.2
GTEX-144GM-1026-SM-79OKU 20-29 years, male 119.8
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 117.9
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 117.5
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 116.9
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 115.7
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 114.9
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 114.6
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 112.4
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 111.7
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 109.7
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 109.2
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 109.0
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 108.9
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 107.7
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 106.1
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 105.6
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 104.9
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 104.7
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 102.4
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 101.9
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 101.5
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 101.0
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 98.4
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 97.5
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 96.1
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 95.3
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 95.0
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 93.1
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 92.5
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 91.9
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 91.5
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 91.5
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 91.4
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 90.4
GTEX-13O61-1326-SM-5KM31 60-69 years, male 90.2
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 90.2
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 89.1
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 88.9
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 87.8
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 87.5
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 87.0
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 86.9
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 86.8
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 85.7
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 85.3
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 83.8
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 81.9
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 81.8
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 81.0
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 79.7
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 77.2
GTEX-183FY-1626-SM-793D8 20-29 years, male 71.2
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 69.4
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 67.7
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 62.3
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

382.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 382.3
FF:10024-101D6 15,40,85 years, mixed 382.3

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