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SH3BGRL3
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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:135.5 nTPM
HPA Brain:167.0 nTPM
GTEx:135.5 nTPM
FANTOM5:243.6 Scaled Tags Per Million
Pig:541.8 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

167.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 156.9
1981 Female, age 72, midline 181.0
2194 Female, age 79, both hemispheres 162.7
2565 Male, age 75, midline 157.4
2816 Male, age 47, midline 147.1
2048 Male, age 55, midline 136.6
Cervical spinal cord, dorsal horn
nTPM: 154.5
2173 Female, age 72, unknown 172.9
2721 Male, age 90, both hemispheres 158.9
2069 Male, age 47, both hemispheres 154.4
1877 Male, age 55, unknown 150.0
2296 Male, age 66, both hemispheres 146.7
2297 Male, age 75, both hemispheres 143.9
Cervical spinal cord, ventral horn
nTPM: 167.0
2098 Female, age 72, unknown 201.7
2480 Male, age 75, both hemispheres 184.4
2809 Male, age 90, both hemispheres 171.4
2295 Male, age 66, both hemispheres 158.3
2068 Male, age 55, unknown 148.6
2820 Female, age 79, both hemispheres 137.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

135.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 135.5
Samples: 159

Max nTPM: 314.0
Min nTPM: 69.5
Std nTPM: 37.7
Median nTPM: 131.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 314.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 281.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 264.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 230.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 225.8
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 211.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 204.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 195.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 195.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 193.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 191.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 190.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 189.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 187.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 185.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 180.8
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 178.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 177.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 176.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 175.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 173.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 173.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 166.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 166.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 162.7
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 162.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 161.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 161.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 161.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 160.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 160.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 159.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 159.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 158.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 158.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 157.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 155.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 155.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 155.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 154.5
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 153.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 153.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 152.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 152.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 151.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 151.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 150.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 149.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 147.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 147.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 147.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 147.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 146.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 145.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 145.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 143.5
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 143.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 141.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 139.8
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 139.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 138.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 138.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 138.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 137.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 137.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 137.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 137.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 137.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 136.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 135.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 135.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 135.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 134.5
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 134.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 134.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 133.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 132.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 132.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 131.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 131.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 131.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 130.7
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 130.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 129.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 128.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 127.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 127.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 127.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 127.4
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 126.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 124.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 123.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 123.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 123.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 123.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 122.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 122.8
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 122.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 121.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 120.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 120.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 120.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 120.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 119.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 119.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 118.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 117.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 116.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 116.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 116.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 115.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 112.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 112.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 111.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 111.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 111.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 108.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 108.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 107.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 107.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 106.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 106.6
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 106.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 105.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 104.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 104.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 103.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 103.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 103.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 102.6
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 101.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 101.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 100.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 100.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 99.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 98.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 98.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 98.3
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 97.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 97.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 96.2
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 95.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 95.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 94.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 93.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 92.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 92.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 92.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 91.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 90.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 90.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 88.2
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 84.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 83.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 82.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 81.3
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 80.5
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 71.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 69.5
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

243.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 243.6
FF:10159-103A6 76 years, female 254.9
FF:10181-103D1 60 years, female 232.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

541.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 499.4
Samples: 4

Max nTPM: 560.5
Min nTPM: 401.8
Sample A Female 401.8
Sample B Female 529.4
Sample C Male 560.5
Sample D Male 506.0
Ventral spinal cord
nTPM: 541.8
Samples: 4

Max nTPM: 600.4
Min nTPM: 478.2
Sample A Female 523.5
Sample B Female 478.2
Sample C Male 600.4
Sample D Male 565.2

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